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CmoCh06G015890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G015890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSsrA-binding protein
Genome locationCmo_Chr06:11142705..11143340
RNA-Seq ExpressionCmoCh06G015890
SyntenyCmoCh06G015890
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597600.1 hypothetical protein SDJN03_10780, partial [Cucurbita argyrosperma subsp. sororia]3.5e-3491.3Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTA-AAATTSTVYNVSS
        MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSD    SEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTT A AAA T+TVYNVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTA-AAATTSTVYNVSS
KAG7018537.1 putative GTP diphosphokinase CRSH, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.7e-2581.48Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAA
        MASWKKTI SP RKACTIFNQHPRD KKS SD      SEQEKRVDVR+LQGEVMACGYEDV VMWSILDK NSTTT A A
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAA
XP_022138108.1 uncharacterized protein LOC111009357 [Momordica charantia]1.9e-2475.82Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
        MASWKKTI SP RKACTIFNQ PRD KKSHSD      SEQEKRVDVRDLQGEVMACGYEDV VMWSILDK NS   A AA      NVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
XP_022935724.1 uncharacterized protein LOC111442547 [Cucurbita moschata]4.4e-3795.6Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
        MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSD    SEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
XP_022980000.1 uncharacterized protein LOC111479526 [Cucurbita maxima]1.0e-2578.02Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
        MASWKKTI SP RKACTIFNQHPRD KKS SD      SEQEKRVDVR+LQGEVMACGYEDV VMWSILDK NSTTTAA     T  NVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
TrEMBL top hitse value%identityAlignment
A0A1S3AXS6 uncharacterized protein LOC103483930 isoform X37.8e-2475Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILD-KTNSTTTAAAATTSTVYNVSS
        MASWKKTI SP RKACTIFNQ+PRD KKSHSD      SEQEKRVDVR+LQGEVMACGYEDV VMWSILD K NS  T A AT     NVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILD-KTNSTTTAAAATTSTVYNVSS
A0A5A7U9W0 Uncharacterized protein7.8e-2475Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILD-KTNSTTTAAAATTSTVYNVSS
        MASWKKTI SP RKACTIFNQ+PRD KKSHSD      SEQEKRVDVR+LQGEVMACGYEDV VMWSILD K NS  T A AT     NVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILD-KTNSTTTAAAATTSTVYNVSS
A0A6J1CC51 uncharacterized protein LOC1110093579.2e-2575.82Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
        MASWKKTI SP RKACTIFNQ PRD KKSHSD      SEQEKRVDVRDLQGEVMACGYEDV VMWSILDK NS   A AA      NVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
A0A6J1F683 uncharacterized protein LOC1114425472.1e-3795.6Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
        MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSD    SEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
A0A6J1IUX8 uncharacterized protein LOC1114795264.9e-2678.02Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
        MASWKKTI SP RKACTIFNQHPRD KKS SD      SEQEKRVDVR+LQGEVMACGYEDV VMWSILDK NSTTTAA     T  NVSS
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48330.1 unknown protein1.0e-1556.25Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAA
        MASWKKTI +P +KA T FNQ P+ + + H+++ + E  E EKR  V++LQG+VMACGYEDV VMWSILDK+NS+   ++
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAA
AT3G17580.1 unknown protein1.6e-1655.56Show/hide
Query:  MASWKKTITSPIRKACTIFNQHPRDSKKS-HSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAA
        MASWKKTI +P +KA T FNQ  +  KK      D+    E EKR+ V++LQGEVMACGY+DV VMWSILDK+NS+   ++
Subjt:  MASWKKTITSPIRKACTIFNQHPRDSKKS-HSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGA
GCTCTCGGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACT
CTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTTGGAAGAAAACCATAACTTCTCCTATTAGAAAGGCTTGCACAATCTTCAACCAACACCCGAGAGACTCGAAGAAGTCCCACTCCGACTCCGACTCAGGTGA
GCTCTCGGAGCAAGAGAAGCGAGTAGACGTGAGAGACCTGCAAGGAGAGGTGATGGCATGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACTAACT
CTACTACTACCGCCGCCGCCGCCACCACCTCCACCGTCTATAATGTGTCTTCTTAATCATCGTCGTGGTGGTCGCCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGATAA
CTCTTTTTCTCTATTTCTCAATCAGTTATGATTTCGTTTTGTTTATAGGGAAGGAATGAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTGAGACTTATTACTCTTA
GTTAATGTAAAAATGAAATCTCTTTCCTCGTGGGAAATGGAACCTCATCTTTCTCGGTATTTTGATTTAGAGAGATAATTTTTTAAATTAGATACCAATTTTGTTACCAA
TAATTTCAAATAGAA
Protein sequenceShow/hide protein sequence
MASWKKTITSPIRKACTIFNQHPRDSKKSHSDSDSGELSEQEKRVDVRDLQGEVMACGYEDVQVMWSILDKTNSTTTAAAATTSTVYNVSS