; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh06G016050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G016050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsplicing factor 3B subunit 4
Genome locationCmo_Chr06:11242345..11245817
RNA-Seq ExpressionCmoCh06G016050
SyntenyCmoCh06G016050
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034158 - SF3B4, RNA recognition motif 1
IPR034159 - SF3B4, RNA recognition motif 2
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK23651.1 splicing factor 3B subunit 4 [Cucumis melo var. makuwa]2.7e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

XP_004147654.1 splicing factor 3B subunit 4 [Cucumis sativus]2.7e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

XP_022138265.1 splicing factor 3B subunit 4 [Momordica charantia]2.7e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

XP_022972146.1 splicing factor 3B subunit 4-like [Cucurbita maxima]2.7e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

XP_023540813.1 splicing factor 3B subunit 4 [Cucurbita pepo subsp. pepo]2.7e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

TrEMBL top hitse value%identityAlignment
A0A0A0LAZ0 Uncharacterized protein1.3e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

A0A5D3DJ06 Splicing factor 3B subunit 41.3e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

A0A6J1C8Z7 splicing factor 3B subunit 41.3e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

A0A6J1G8U2 splicing factor 3B subunit 4-like1.3e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

A0A6J1I560 splicing factor 3B subunit 4-like1.3e-7862.77Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQ                     VSEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE +
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

SwissProt top hitse value%identityAlignment
O14102 Spliceosome-associated protein 491.1e-3735.41Show/hide
Query:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY
        +RNQDAT Y+GNLD                      +V++ +L+EL +QAGPV                                           VN++
Subjt:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY

Query:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL
        +P+DRV N H G+GF EF  E+D +YA ++LN +KL+GKPIRVN+ S+   ++T+                                   +GANLF+GNL
Subjt:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL

Query:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVIKD
        DP VDE++LYDTFSA G +V  P++ RD + G S+G+GF+SYDSFE +DAAIE + +
Subjt:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVIKD

Q09442 Splicing factor 3B subunit 46.1e-4942.75Show/hide
Query:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY
        ERNQDAT YVG LD                      +VSE +LWEL VQAGPV                                           V+V 
Subjt:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY

Query:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL
        +PKDRVT  HQG+GF+EF  EEDADYAIK+LNMIKLYGKPI+VNK                                    AS  +K++DVGAN+F+GNL
Subjt:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL

Query:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVIKDNPPPLLLKFVVSRCAKVLY
        DP+VDEKLLYDTFSAFGVI+  PKIMRD D+G S+GF FI++ SFEASD A+E +         +F+ +R   V Y
Subjt:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVIKDNPPPLLLKFVVSRCAKVLY

Q15427 Splicing factor 3B subunit 48.2e-5447.45Show/hide
Query:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY
        ERNQDAT YVG LD                      +VSE LLWELF+QAGPV                                           VN +
Subjt:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY

Query:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL
        +PKDRVT  HQGYGF+EF SEEDADYAIK++NMIKLYGKPIRVNK                                    AS   K+LDVGAN+FIGNL
Subjt:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL

Query:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        DP++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIE +
Subjt:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

Q6AYL5 Splicing factor 3B subunit 48.2e-5447.45Show/hide
Query:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY
        ERNQDAT YVG LD                      +VSE LLWELF+QAGPV                                           VN +
Subjt:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY

Query:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL
        +PKDRVT  HQGYGF+EF SEEDADYAIK++NMIKLYGKPIRVNK                                    AS   K+LDVGAN+FIGNL
Subjt:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL

Query:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        DP++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIE +
Subjt:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

Q8QZY9 Splicing factor 3B subunit 48.2e-5447.45Show/hide
Query:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY
        ERNQDAT YVG LD                      +VSE LLWELF+QAGPV                                           VN +
Subjt:  ERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVSTCYFAVNVY

Query:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL
        +PKDRVT  HQGYGF+EF SEEDADYAIK++NMIKLYGKPIRVNK                                    AS   K+LDVGAN+FIGNL
Subjt:  VPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNL

Query:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI
        DP++DEKLLYDTFSAFGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIE +
Subjt:  DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVI

Arabidopsis top hitse value%identityAlignment
AT1G49760.1 poly(A) binding protein 87.7e-1533.12Show/hide
Query:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLF
        V+V V +D  T    GYG++ + + +DA  A+  LN + L G+ IRV    R  +L                                  +   VG N+F
Subjt:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLF

Query:  IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE
        I NLD  +D K L++TFSAFG I+ + K+  DP +G S+G+GF+ YD+ EA+  AI+
Subjt:  IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE

AT1G49760.2 poly(A) binding protein 87.7e-1533.12Show/hide
Query:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLF
        V+V V +D  T    GYG++ + + +DA  A+  LN + L G+ IRV    R  +L                                  +   VG N+F
Subjt:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLF

Query:  IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE
        I NLD  +D K L++TFSAFG I+ + K+  DP +G S+G+GF+ YD+ EA+  AI+
Subjt:  IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE

AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-7558.82Show/hide
Query:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG
        MTT+IAPGVGANLLGQH+ ERNQDAT YVG LD Q                     +SEELLWELFVQAGPV                            
Subjt:  MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLG

Query:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF
                       VNVYVPKDRVTNLHQ YGFIE+RSEEDADYAIKVLNMIKL+GKPIRVNK                                    
Subjt:  LSISLKKIVSTCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTF

Query:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE
        ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASDAAIE
Subjt:  ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE

AT2G23350.1 poly(A) binding protein 46.5e-1431.65Show/hide
Query:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVG-ANL
        V+V V +D  TN   GYG++ + + +DA+ A++ LN   L GK IR+                                    T++S+D  +   G  NL
Subjt:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVG-ANL

Query:  FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE
        F+ NLD  VD K L++ FS  G IV + K+  D   G SRG+GF+ +D+ +++  AIE
Subjt:  FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE

AT4G34110.1 poly(A) binding protein 21.1e-1636.08Show/hide
Query:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGA-NL
        V V V +D VT    GYG++ F + +DA  AI+ LN I LYGKPIRV                                     ++ +D      GA N+
Subjt:  VNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGA-NL

Query:  FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE
        FI NLD  +D K L+DTFS+FG IV + K+  D  +G S+G+GF+ Y + E++  AIE
Subjt:  FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTGCTCGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTCCT
TTGTTCTCTTCCTCCCTGCTTTTTTCAACTAATCAATCTTCAAATCCCCTCCTCTAGGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGGTG
CGTTCTTTCGTTTCTCTCGTTTTGTGAAGTCTTTGGAATTTATGGAAACTCTGTTTGAGCTGTCTTTTTCCCTTCTTGGTTTGAGCATTTCCTTGAAAAAAATTGTGTCC
ACTTGTTATTTTGCAGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTACGCAAT
TAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGTGAGTAGGGGATTTACTCTTTCAACTGTGCTAGGATGCGTTTTGATATACTGCTCAG
CAACGGAAGATTGTATTTTATGTTCTTATGAAAATGGATATCTTACCTTTGCATCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTCGAC
CCCGATGTCGATGAAAAGCTCCTCTATGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACAGGAAATTCGCGTGGGTTTGG
TTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGTGATTAAAGATAATCCTCCACCTCTCTTATTGAAGTTTGTGGTTTCAAGATGTGCTAAAGTTC
TCTACTGGTTAAACATGGAAACAGTGAAAAACATTGCCCCTCTAAGCTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTGCTCGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATCTAGATCCCCAGGTCCT
TTGTTCTCTTCCTCCCTGCTTTTTTCAACTAATCAATCTTCAAATCCCCTCCTCTAGGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGGTG
CGTTCTTTCGTTTCTCTCGTTTTGTGAAGTCTTTGGAATTTATGGAAACTCTGTTTGAGCTGTCTTTTTCCCTTCTTGGTTTGAGCATTTCCTTGAAAAAAATTGTGTCC
ACTTGTTATTTTGCAGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTACGCAAT
TAAGGTTTTGAATATGATTAAGCTCTACGGGAAGCCAATTCGTGTAAACAAGGTGAGTAGGGGATTTACTCTTTCAACTGTGCTAGGATGCGTTTTGATATACTGCTCAG
CAACGGAAGATTGTATTTTATGTTCTTATGAAAATGGATATCTTACCTTTGCATCTCAAGACAAGAAGAGTTTGGATGTGGGAGCGAATCTCTTCATAGGAAACCTCGAC
CCCGATGTCGATGAAAAGCTCCTCTATGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACAGGAAATTCGCGTGGGTTTGG
TTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGTGATTAAAGATAATCCTCCACCTCTCTTATTGAAGTTTGTGGTTTCAAGATGTGCTAAAGTTC
TCTACTGGTTAAACATGGAAACAGTGAAAAACATTGCCCCTCTAAGCTCTTAG
Protein sequenceShow/hide protein sequence
MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVLCSLPPCFFQLINLQIPSSRVSEELLWELFVQAGPVGAFFRFSRFVKSLEFMETLFELSFSLLGLSISLKKIVS
TCYFAVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKVSRGFTLSTVLGCVLIYCSATEDCILCSYENGYLTFASQDKKSLDVGANLFIGNLD
PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEVIKDNPPPLLLKFVVSRCAKVLYWLNMETVKNIAPLSS