CuGenDBv2

Gene ID	CmoCh06G016060
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	splicing factor 3B subunit 4-like
Genome location	Cmo_Chr06:11245850..11247018
RNA-Seq Expression	CmoCh06G016060
Synteny	CmoCh06G016060
Gene Ontology terms	GO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138265.1 splicing factor 3B subunit 4 [Momordica charantia]

7.9e-94

85.9

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G  +PPRPFANG IA
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        PSPIPAIRPPPPQGVAFPPMQMPGQ PAWQGQPQQ GQ+MPGSM+ PPVQQFRPPPPNMPPPPPQAP HSM IPPPMGMGG QPPLWRPPPPPMQ QQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSM PPPPPNHIPPP  SSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

XP_022948089.1 splicing factor 3B subunit 4-like [Cucurbita moschata]

8.7e-109

93.83

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSMPPPPPPNHIPPPHPSSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

XP_022972146.1 splicing factor 3B subunit 4-like [Cucurbita maxima]

9.0e-106

92.14

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGI 
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPM--QQQQ
        PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPM  QQQQ
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPM--QQQQ

Query:  QPGRPPMQMSSMPPPPPPNHIPPPHPSSG
        QPGRP MQMSSMPPPPPPNHIPPPHPSSG
Subjt:  QPGRPPMQMSSMPPPPPPNHIPPPHPSSG

XP_023540813.1 splicing factor 3B subunit 4 [Cucurbita pepo subsp. pepo]

1.1e-106

92.95

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPP PMQQQQQ 
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSMPPPPPPNHIPPPHPSSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

XP_038878136.1 splicing factor 3B subunit 4 [Benincasa hispida]

3.9e-93

84.58

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G  +PPRPFANG I 
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        PSPIPAIRPPPPQGVAFPPM M GQPPAWQGQPQQ GQ+MPGS++ PPVQQFRPPPPNMP PPPQA  HSMPIPPPMGMGG QPPLWRPPPPPM  QQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSMPPPPPPNHIPPP PSSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VR80 Splicing factor 3B subunit 4

2.5e-93

84.58

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G  +PPRPFANG I 
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        P+PIPAIRP PPQGVAFPPM M GQPPAWQGQPQQ GQ+MPGSM+ PPVQQFRPPPPNMP PPPQA  HSMPIPPPMGMGG QPPLWRPPPPPM QQQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSMPPPPPPNHIPPP PSSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

A0A5D3DJ06 Splicing factor 3B subunit 4

2.5e-93

84.58

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G  +PPRPFANG I 
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        P+PIPAIRP PPQGVAFPPM M GQPPAWQGQPQQ GQ+MPGSM+ PPVQQFRPPPPNMP PPPQA  HSMPIPPPMGMGG QPPLWRPPPPPM QQQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSMPPPPPPNHIPPP PSSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

A0A6J1C8Z7 splicing factor 3B subunit 4

3.8e-94

85.9

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNG +G  +PPRPFANG IA
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        PSPIPAIRPPPPQGVAFPPMQMPGQ PAWQGQPQQ GQ+MPGSM+ PPVQQFRPPPPNMPPPPPQAP HSM IPPPMGMGG QPPLWRPPPPPMQ QQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSM PPPPPNHIPPP  SSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

A0A6J1G8U2 splicing factor 3B subunit 4-like

4.2e-109

93.83

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
        PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQP

Query:  GRPPMQMSSMPPPPPPNHIPPPHPSSG
        GRPPMQMSSMPPPPPPNHIPPPHPSSG
Subjt:  GRPPMQMSSMPPPPPPNHIPPPHPSSG

A0A6J1I560 splicing factor 3B subunit 4-like

4.3e-106

92.14

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA
        RGFG   Y           AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGI 
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGIA

Query:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPM--QQQQ
        PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPM  QQQQ
Subjt:  PSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPM--QQQQ

Query:  QPGRPPMQMSSMPPPPPPNHIPPPHPSSG
        QPGRP MQMSSMPPPPPPNHIPPPHPSSG
Subjt:  QPGRPPMQMSSMPPPPPPNHIPPPHPSSG

SwissProt top hits

e value

%identity

Alignment

Q09442 Splicing factor 3B subunit 4

2.8e-17

41.77

Show/hide

Query:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPK-------------VAQPNGTMGTLMPPRPFANGGIAPSPI
        AMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP   K RPH +F+  P  +P               A   G  G   PP             
Subjt:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPK-------------VAQPNGTMGTLMPPRPFANGGIAPSPI

Query:  PAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPP----PMGMGGGQPPL---------WRPPP
        P + PPPP     PP  MP  P      P       P S M PP     PPPP   P PP  PG   P PP    P GMGG  PP            PPP
Subjt:  PAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPP----PMGMGGGQPPL---------WRPPP

Query:  PPMQQQQQPGRPPMQMSSMPPPPPPNH--IPPPHPSS
        PP      PG  P    S PP PP  H  IPPP P S
Subjt:  PPMQQQQQPGRPPMQMSSMPPPPPPNH--IPPPHPSS

Q15427 Splicing factor 3B subunit 4

2.6e-15

40.16

Show/hide

Query:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGV-
        AMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP      G  P P+P     PP G+ 
Subjt:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGV-

Query:  -AFPPMQMP----GQPPAWQGQP---------QQQGQIMPGSMMLPPVQQFR---------------PPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPL
         A PP  MP    G  P   G P                PG M  P + Q +               PP     PPP   PG   P PPPMGM    PP 
Subjt:  -AFPPMQMP----GQPPAWQGQP---------QQQGQIMPGSMMLPPVQQFR---------------PPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPL

Query:  WRP--PPPPMQQQQQPGRPPMQMS---SMPPPPPP-----NHIPPPHPS
          P   P PM      G PP+      + PP PPP       +PPP P+
Subjt:  WRP--PPPPMQQQQQPGRPPMQMS---SMPPPPPP-----NHIPPPHPS

Q6AYL5 Splicing factor 3B subunit 4

2.6e-15

40.16

Show/hide

Query:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGV-
        AMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP      G  P P+P     PP G+ 
Subjt:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGV-

Query:  -AFPPMQMP----GQPPAWQGQP---------QQQGQIMPGSMMLPPVQQFR---------------PPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPL
         A PP  MP    G  P   G P                PG M  P + Q +               PP     PPP   PG   P PPPMGM    PP 
Subjt:  -AFPPMQMP----GQPPAWQGQP---------QQQGQIMPGSMMLPPVQQFR---------------PPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPL

Query:  WRP--PPPPMQQQQQPGRPPMQMS---SMPPPPPP-----NHIPPPHPS
          P   P PM      G PP+      + PP PPP       +PPP P+
Subjt:  WRP--PPPPMQQQQQPGRPPMQMS---SMPPPPPP-----NHIPPPHPS

Q8QZY9 Splicing factor 3B subunit 4

2.6e-15

40.16

Show/hide

Query:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGV-
        AMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA  PP  P    P   ++G+ +PP      G  P P+P     PP G+ 
Subjt:  AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQP-NGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGV-

Query:  -AFPPMQMP----GQPPAWQGQP---------QQQGQIMPGSMMLPPVQQFR---------------PPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPL
         A PP  MP    G  P   G P                PG M  P + Q +               PP     PPP   PG   P PPPMGM    PP 
Subjt:  -AFPPMQMP----GQPPAWQGQP---------QQQGQIMPGSMMLPPVQQFR---------------PPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPL

Query:  WRP--PPPPMQQQQQPGRPPMQMS---SMPPPPPP-----NHIPPPHPS
          P   P PM      G PP+      + PP PPP       +PPP P+
Subjt:  WRP--PPPPMQQQQQPGRPPMQMS---SMPPPPPP-----NHIPPPHPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.7e-36

52.84

Show/hide

Query:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGG
        RGFG   Y           +M GQYL NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHTLFA GPP+     Q NG       PRPFANG 
Subjt:  RGFGSSFYLEM--------AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGG

Query:  IAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSM------PIPPPMGMGGGQPPLWRPPPP
        + P PIPA R PPP     PP     QPP+W  QPQQ         M+PP  QFRPP    PPPPPQ   H        P PPP  MG  Q   W  PP 
Subjt:  IAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSM------PIPPPMGMGGGQPPLWRPPPP

Query:  PMQQQ---QQPGRPPMQMSSMPPPPPPNH
         MQQQ    Q  +PP Q   M  PPPP H
Subjt:  PMQQQ---QQPGRPPMQMSSMPPPPPPNH

AT5G07740.1 actin binding

8.1e-04

36.56

Show/hide

Query:  PQKSRPHTLFASGPPTL---PKVAQPNGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMP-----GQPPAWQGQPQQQGQIMPGSMMLPPVQ
        P  S  H++ +  PP+    P    P  + G+  PP P      +P P     PPPP G   PP   P     G PP     P      +P     PP+ 
Subjt:  PQKSRPHTLFASGPPTL---PKVAQPNGTMGTLMPPRPFANGGIAPSPIPAIRPPPPQGVAFPPMQMP-----GQPPAWQGQPQQQGQIMPGSMMLPPVQ

Query:  QFRPPPP-------NMPPPPPQAPGH--SMPIPPPMGMGGGQPPLWRPPPPPMQQQQQPGRPPMQMSSMPPPPPP---NHIPPPHP
           PPPP         PPPPP  P H  + P PPP  M GG PP   PPPPPM    QP  PP      PPPPPP      PPP P
Subjt:  QFRPPPP-------NMPPPPPQAPGH--SMPIPPPMGMGGGQPPLWRPPPPPMQQQQQPGRPPMQMSSMPPPPPP---NHIPPPHP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATTTTGTTTTGTTTGCTATTCTTGTGGAAAGCTCAGCTTCTTTATCAGTTGATTTCTGTCGTGGCTTCGGTTCAAGCTTTTATCTCGAAATGGCAATGAATGGCCA
GTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACACGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGA
AGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGT
GGCATTGCTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCA
GCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAGTTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCGCCTCAGGCTCCTGGTCATTCCA
TGCCTATCCCTCCACCAATGGGAATGGGAGGAGGACAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAACAGCAGCAGCAGCCGGGAAGGCCCCCTATGCAAATG
TCGTCGATGCCCCCACCGCCACCTCCGAATCACATTCCACCACCTCATCCATCTTCTGGCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNFVLFAILVESSASLSVDFCRGFGSSFYLEMAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANG
GIAPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQPGRPPMQM
SSMPPPPPPNHIPPPHPSSG

CmoCh06G016060 (gene) of Cucurbita moschata (Rifu) v1 genome