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CmoCh06G016530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh06G016530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S8
Genome locationCmo_Chr06:11466832..11468559
RNA-Seq ExpressionCmoCh06G016530
SyntenyCmoCh06G016530
Gene Ontology termsGO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001047 - Ribosomal protein S8e
IPR042563 - Ribosomal protein S8e subdomain, eukaryotes


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598870.1 40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. sororia]2.4e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKT A+AKK++EGDAP+EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

KAG7029811.1 40S ribosomal protein S8, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKT A+AKK++EGDAP+EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

XP_008451649.1 PREDICTED: 40S ribosomal protein S8-like [Cucumis melo]5.3e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKTSA+AKK++EGDA +EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

XP_022145218.1 40S ribosomal protein S8 [Momordica charantia]7.3e-1689.8Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKTSA+AKK++EGDAPSEEA KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

XP_022929761.1 40S ribosomal protein S8-like [Cucurbita moschata]2.4e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKT A+AKK++EGDAP+EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

TrEMBL top hitse value%identityAlignment
A0A5A7UI08 40S ribosomal protein S82.6e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKTSA+AKK++EGDA +EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

A0A5D3BT12 40S ribosomal protein S82.6e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKTSA+AKK++EGDA +EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

A0A6J1CVC9 40S ribosomal protein S83.6e-1689.8Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKTSA+AKK++EGDAPSEEA KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

A0A6J1EP23 40S ribosomal protein S81.1e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKT A+AKK++EGDAP+EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

A0A6J1K537 40S ribosomal protein S81.1e-1483.67Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQWYLQHYGVDIGRKKKT A+AKK++EGDAP+EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

SwissProt top hitse value%identityAlignment
O81361 40S ribosomal protein S81.6e-1380Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD--KEGDAPSEEATKSNHVS
        VDAAPFKQWYLQHYGV+IGRKKKT AAAKKD  +EG+A +EEA KSNHV+
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD--KEGDAPSEEATKSNHVS

P49199 40S ribosomal protein S83.9e-1275Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEG---DAPSEEATKSNHVSR
        VDAAPFKQWYL HYGVDIGRKKK + AAKKD EG   +A +EEA KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEG---DAPSEEATKSNHVSR

Q08069 40S ribosomal protein S81.8e-1271.15Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEG---DAPSEEATKSNHVSR
        VDAAPFKQWYL HYGVDIGRKKKT AA K + EG   +A +EE  KSNHV+R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEG---DAPSEEATKSNHVSR

Q93VG5 40S ribosomal protein S8-13.7e-1057.89Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD-KEGD----APSEEATKSNHVSRIVS
        VDAAPFKQWYL HYGV++GRKKK++++ KKD +EG+    A  EE  KSNH+ R ++
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD-KEGD----APSEEATKSNHVSRIVS

Q9FIF3 40S ribosomal protein S8-25.9e-0863.27Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQ YLQHYGVDIGRKKK  A           +EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR

Arabidopsis top hitse value%identityAlignment
AT5G20290.1 Ribosomal protein S8e family protein2.6e-1157.89Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD-KEGD----APSEEATKSNHVSRIVS
        VDAAPFKQWYL HYGV++GRKKK++++ KKD +EG+    A  EE  KSNH+ R ++
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKD-KEGD----APSEEATKSNHVSRIVS

AT5G59240.1 Ribosomal protein S8e family protein4.2e-0963.27Show/hide
Query:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR
        VDAAPFKQ YLQHYGVDIGRKKK  A           +EE  KSNHV R
Subjt:  VDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTTGATGCAGCACCATTCAAACAGTGGTA
CCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATG
TCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTAAGCTTTGAAATCGGGCTTGGCAGGAACTTTAGAACTCCTCTTCCCAGAAGAGCTCTCGTCTCACCAAGATGGGTTGATGCAGCACCATTCAAACAGTGGTA
CCTTCAGCATTATGGAGTGGATATTGGACGGAAGAAGAAGACCTCAGCAGCTGCTAAGAAGGACAAGGAAGGTGATGCTCCGAGCGAGGAGGCGACGAAGAGCAACCATG
TCAGCAGGATCGTAAGCTTGATCCTCATATTGAAGAACAATTCAGCGGTGGTCGTTTGATGGCCTGTATCTCATCAAGACCGGGTCAATGCGATCGGCTCGATGGGTAAG
CAGTTGAAATGCCTTGTGATCTAGCTTGTCTTTGATGTATTCTTGTCGCAACTTGTTTGAGCGCGAACATCGAAGCGTTTTTGGTGAGTCTTGCTGAGTTTTTAGCCTAT
TTGGAGGGCAAAGATTTCGAGTTCTACATGAAGAACCTTCAAAGGAAGAAGGGAAAAGGAGCTGGTGCTGCTTAAGTCAGTGTATCATTGAGATGTTTTGTCCCATTTCA
GTAGCCATTTCTTCGTTTGAAGACGATTAGATGTTGCAGCAAAGATGAAAGAGTAGCTTAGGAGCTTTAGTTTTACTGATATTAGTTTGTTCAATATAAACCCTAAACTT
TTGGGATCATTTAATAATTATTAGTGAATTATGGGTGACATAGTTTCTTATTTAACAAACAGACCATAA
Protein sequenceShow/hide protein sequence
MVLSFEIGLGRNFRTPLPRRALVSPRWVDAAPFKQWYLQHYGVDIGRKKKTSAAAKKDKEGDAPSEEATKSNHVSRIVSLILILKNNSAVVV