CuGenDBv2

Gene ID	CmoCh06G016780
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	IQ domain-containing protein/TIG domain-containing protein/CG-1 domain-containing protein/Ank_2 domain-containing protein
Genome location	Cmo_Chr06:11603652..11604125
RNA-Seq Expression	CmoCh06G016780
Synteny	CmoCh06G016780
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7029116.1 hypothetical protein SDJN02_10301 [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-53

97.48

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPV+PTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAA+VSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIPG
        RSILYYVTAQP PRKDIPG
Subjt:  RSILYYVTAQPEPRKDIPG

XP_022932613.1 uncharacterized protein LOC111439117 isoform X1 [Cucurbita moschata]

2.3e-54

100

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIPG
        RSILYYVTAQPEPRKDIPG
Subjt:  RSILYYVTAQPEPRKDIPG

XP_022932614.1 uncharacterized protein LOC111439117 isoform X2 [Cucurbita moschata]

1.5e-53

100

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIP
        RSILYYVTAQPEPRKDIP
Subjt:  RSILYYVTAQPEPRKDIP

XP_022972186.1 uncharacterized protein LOC111470796 [Cucurbita maxima]

5.4e-51

94.12

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQ+RNSQSSVFYELSSLAMNILRSPPSSIPF+DHSPV+PTQMTPA FASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFF AA+VSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIPG
        RSILYYVTAQP PRKDIPG
Subjt:  RSILYYVTAQPEPRKDIPG

XP_023538787.1 uncharacterized protein LOC111799610 isoform X1 [Cucurbita pepo subsp. pepo]

3.5e-50

95.8

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRR  QRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPV+PTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAA VSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIPG
        RSILYYVTAQP PRKDIPG
Subjt:  RSILYYVTAQPEPRKDIPG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BYH6 uncharacterized protein LOC103494590 isoform X1

5.1e-39

75.19

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPV----------LPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVA
        MM+RQQ+   +SSVFYELSSL MNILR+PPSSIPFSDHSPV          +P Q+TPAGFASLLLG+SLALMLCGSVTFFIGFMMMPWVIGLVMFF+VA
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPV----------LPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVA

Query:  AIVSSLFMIGRSILYYVTAQPEPRKDIPG
        A+VS L MIGRSI+ Y TA   PRKDIPG
Subjt:  AIVSSLFMIGRSILYYVTAQPEPRKDIPG

A0A5A7TRR9 Uncharacterized protein

5.1e-39

75.19

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPV----------LPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVA
        MM+RQQ+   +SSVFYELSSL MNILR+PPSSIPFSDHSPV          +P Q+TPAGFASLLLG+SLALMLCGSVTFFIGFMMMPWVIGLVMFF+VA
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPV----------LPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVA

Query:  AIVSSLFMIGRSILYYVTAQPEPRKDIPG
        A+VS L MIGRSI+ Y TA   PRKDIPG
Subjt:  AIVSSLFMIGRSILYYVTAQPEPRKDIPG

A0A6J1EXH3 uncharacterized protein LOC111439117 isoform X2

7.3e-54

100

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIP
        RSILYYVTAQPEPRKDIP
Subjt:  RSILYYVTAQPEPRKDIP

A0A6J1F279 uncharacterized protein LOC111439117 isoform X1

1.1e-54

100

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIPG
        RSILYYVTAQPEPRKDIPG
Subjt:  RSILYYVTAQPEPRKDIPG

A0A6J1I5A3 uncharacterized protein LOC111470796

2.6e-51

94.12

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Query:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG
        MMRRQQ+RNSQSSVFYELSSLAMNILRSPPSSIPF+DHSPV+PTQMTPA FASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFF AA+VSSLFMIG
Subjt:  MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIG

Query:  RSILYYVTAQPEPRKDIPG
        RSILYYVTAQP PRKDIPG
Subjt:  RSILYYVTAQPEPRKDIPG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G27290.1 unknown protein

4.4e-27

51.91

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Query:  MRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQ-------------------MTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIG
        M R+Q+   QS VFY+LSSL +N+LRSPP  I   DH P  P +                   ++P+GFASLLLG+S+ALMLCGSVTFFIGF++MPWV+ 
Subjt:  MRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQ-------------------MTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIG

Query:  LVMFFFVAAIVSSLFMIGRSILYYVTAQPEP
        L++ F+VA IVS++ M+GRSIL YV   P P
Subjt:  LVMFFFVAAIVSSLFMIGRSILYYVTAQPEP

AT1G27290.2 unknown protein

4.4e-27

51.91

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Query:  MRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQ-------------------MTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIG
        M R+Q+   QS VFY+LSSL +N+LRSPP  I   DH P  P +                   ++P+GFASLLLG+S+ALMLCGSVTFFIGF++MPWV+ 
Subjt:  MRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQ-------------------MTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIG

Query:  LVMFFFVAAIVSSLFMIGRSILYYVTAQPEP
        L++ F+VA IVS++ M+GRSIL YV   P P
Subjt:  LVMFFFVAAIVSSLFMIGRSILYYVTAQPEP

Sequences

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CDS sequence

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ATGATGCGGCGGCAGCAGCAGCGGAATTCCCAATCGAGTGTTTTCTACGAGCTTTCTTCTCTTGCCATGAATATTCTCCGATCGCCTCCGTCGTCAATCCCGTTTTCCGA
TCACTCACCGGTGTTGCCGACGCAGATGACCCCGGCCGGGTTTGCGTCGCTTCTTCTAGGGATGTCTCTGGCTCTGATGCTCTGTGGATCGGTTACGTTCTTCATCGGCT
TCATGATGATGCCTTGGGTTATTGGATTGGTTATGTTTTTCTTTGTCGCCGCCATTGTTTCGAGTCTCTTCATGATCGGACGTTCGATCTTATACTACGTTACGGCTCAG
CCTGAGCCCAGAAAGGACATCCCAGGTACGCCGATTCGTTTTGATGATTTTCTCACGATTATTGATTTCTCTTTGATGCCTTATTCATTAGTTTCGGATCTTAGATTATA
TGTTGAATCTGTTCAAAGCAAATTGCCCACATGA

mRNA sequence

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Protein sequence

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MMRRQQQRNSQSSVFYELSSLAMNILRSPPSSIPFSDHSPVLPTQMTPAGFASLLLGMSLALMLCGSVTFFIGFMMMPWVIGLVMFFFVAAIVSSLFMIGRSILYYVTAQ
PEPRKDIPGTPIRFDDFLTIIDFSLMPYSLVSDLRLYVESVQSKLPT

CmoCh06G016780 (gene) of Cucurbita moschata (Rifu) v1 genome