CuGenDBv2

Gene ID	CmoCh06G016900
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transmembrane protein
Genome location	Cmo_Chr06:11650987..11651499
RNA-Seq Expression	CmoCh06G016900
Synteny	CmoCh06G016900
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597681.1 DNA-directed RNA polymerases II and V subunit 8A, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-85

98.81

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSP TRQQVDSALRAVNREDADREDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGL
        PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGL
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGL

KAG7029126.1 hypothetical protein SDJN02_10311, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.0e-88

99.41

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
        PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

XP_022932745.1 uncharacterized protein LOC111439202 [Cucurbita moschata]

2.7e-88

100

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
        PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

XP_022972117.1 uncharacterized protein LOC111470752 [Cucurbita maxima]

3.4e-83

94.71

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLI+KWLPSPPTR QVDSAL+AVNR DA REDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
        PIRFK WA+ELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVG+MVAVYALGVATSMYLGLSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

XP_023539875.1 uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo]

5.1e-87

97.65

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLI+KWLPSPPTRQQVDSALRAVNREDADREDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
        PIRFKRWA+ELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTM+AVYALGVATSMYLGLSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KVZ1 Uncharacterized protein

4.2e-71

84.12

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRVRNSL+NS +FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V+PHPLI  WLPSPPTR QVDSALRAVNR+D+DRED E LG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
         I F RWA+ELFAEAVVKNV K+VM RVPVGIAGIAGIGAVTRSGKD+VGT+VAVYALGVATS+YL LSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

A0A1S3BXX1 uncharacterized protein LOC103494601

9.3e-71

82.94

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MG+SASKRVRNSL+NSP+FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V+PHPLI  WLPSPPTR QVDSALRAVNR+D+D E  ETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
         IRF+RWA+ELFAEAVVKNV K+VM RVP+GIAGIAGIGAVTRSGKD+VG +VAVYALGVATS+YL LSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

A0A5D3D2N6 Uncharacterized protein

9.3e-71

82.94

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MG+SASKRVRNSL+NSP+FDSAC+STFSHCL LTQHAY GVFPYQLCTAADHLH LLT V+PHPLI  WLPSPPTR QVDSALRAVNR+D+D E  ETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
         IRF+RWA+ELFAEAVVKNV K+VM RVP+GIAGIAGIGAVTRSGKD+VG +VAVYALGVATS+YL LSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

A0A6J1F2Z4 uncharacterized protein LOC111439202

1.3e-88

100

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
        PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

A0A6J1I3X0 uncharacterized protein LOC111470752

1.6e-83

94.71

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGISASKRV+NSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLI+KWLPSPPTR QVDSAL+AVNR DA REDEETLG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG
        PIRFK WA+ELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVG+MVAVYALGVATSMYLGLSG
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43540.1 unknown protein

9.9e-49

57.99

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Query:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG
        MGIS SKRV   LSNSP+FDSACDS +   L L QHA+AGV PYQL +AA H+HR L+ +R  PLI +WL SPP++ QVDSALR         ++EE LG
Subjt:  MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLG

Query:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLS
           FK+WA+E+FAEAVV N  K +  R+P+GI GI GIGAVTRSG++L+G  + VYA+GVATS++L L+
Subjt:  PIRFKRWAMELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLS

Sequences

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CDS sequence

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ATGGGAATATCGGCCTCAAAACGAGTCAGGAACTCACTGTCGAACTCGCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGC
ATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTGCCAAGTGGCTTCCCTCTCCCC
CGACTCGGCAACAGGTCGACTCAGCCCTGCGAGCCGTCAATCGCGAGGACGCGGATCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCGTTGGGCGATGGAG
CTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATTGCAGGAATCGCGGGAATCGGCGCCGTGACTCGGTCGGGAAAAGA
CCTAGTTGGGACTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGTACCTTGGCTTGTCTGGATAG

mRNA sequence

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Protein sequence

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MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAME
LFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGTMVAVYALGVATSMYLGLSG

CmoCh06G016900 (gene) of Cucurbita moschata (Rifu) v1 genome