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CmoCh07G001700 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G001700
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBEST Arabidopsis thaliana protein match is: transcription regulators .
Genome locationCmo_Chr07:902779..903460
RNA-Seq ExpressionCmoCh07G001700
SyntenyCmoCh07G001700
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594536.1 hypothetical protein SDJN03_11089, partial [Cucurbita argyrosperma subsp. sororia]1.4e-6697.22Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVS LENRFNSRKKLRLVRSLGTHESPGKQRSGFWN+V+FIHKLKLKLEAIEREYLKSIKELHALK+VKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

KAG7026515.1 hypothetical protein SDJN02_10517 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-6697.22Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVS LENRFNSRKKLRLVRSLGTHESPGKQRSGFWN+V+FIHKLKLKLEAIEREYLKSIKELHALK+VKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

XP_022926627.1 uncharacterized protein LOC111433703 [Cucurbita moschata]4.5e-68100Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

XP_023003437.1 uncharacterized protein LOC111497051 [Cucurbita maxima]6.7e-6495.14Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVS LENRFNSRKKLRLVRSLGTHESPGKQRSGF N+V+FIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKG+NRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        R+NVVEARVSCS CFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

XP_023518564.1 uncharacterized protein LOC111782031 [Cucurbita pepo subsp. pepo]1.4e-6697.22Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVS L+NRFNSRKKLRLVRSLGTHESPGKQRSGFWN+V+FIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

TrEMBL top hitse value%identityAlignment
A0A0A0KHW9 Uncharacterized protein8.8e-4672.08Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIE----------REYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRL
        MVS L+ RF+SR KLRLVRSL T+ES G+QR  FWN+VLFIHKLKLKLEAIE          REYL SIK+ H+ KEVKVEK GEE +VKVRCEKG +RL
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIE----------REYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRL

Query:  VSVLEALERMRLNVVEARVSCSECFSMEAIAVAED-DQLVNVKDITEAINVAID
        VSVLEA E+M LNVVEARVSC+ECF MEA AVAED  QL+N+ DITEAINVAID
Subjt:  VSVLEALERMRLNVVEARVSCSECFSMEAIAVAED-DQLVNVKDITEAINVAID

A0A6J1ED01 uncharacterized protein LOC1114332043.6e-4769.28Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIE----------REYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRL
        MVS  + RF+SRKKLRLVRSL T++S GKQ S FWN+VLF+HKLKLKLEAIE          REYL S+K++HA KEVKVEK+GEE++VKVRCEKG +RL
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIE----------REYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRL

Query:  VSVLEALERMRLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAID
        V+VLEA ++M LNV++A+VSCSECFSMEAIAVAED+Q +N+ DITEAIN AID
Subjt:  VSVLEALERMRLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAID

A0A6J1EEW8 uncharacterized protein LOC1114337032.2e-68100Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

A0A6J1IR65 uncharacterized protein LOC1114786311.4e-4669.28Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIE----------REYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRL
        MVS  + RF+SRKKLRLVRSL T++S GKQ S FWN+VLF+HKLKLKLEAIE          REYL S+K++HA KEVKVEK+GEE +VKVRCEKG +RL
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIE----------REYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRL

Query:  VSVLEALERMRLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAID
        V+VLEA ++M LNV++A+VSCSECFSMEAIAVAED+Q +N+ DITEAIN AID
Subjt:  VSVLEALERMRLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAID

A0A6J1KMI6 uncharacterized protein LOC1114970513.2e-6495.14Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM
        MVS LENRFNSRKKLRLVRSLGTHESPGKQRSGF N+V+FIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKG+NRLVSVLEALERM
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERM

Query:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA
        R+NVVEARVSCS CFSMEAIAVAEDDQLVNVKDITEAINVAIDA
Subjt:  RLNVVEARVSCSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein5.9e-1841.61Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTH--ESPGKQRSGFWNSVLFIHKLKLKLEAIEREY--LKSIKE--LHALKEVKVEKMGEEIKVKVRCEKGENRLVSVL
        MV++ + +  S+ K   +++L TH   S  +Q      ++L+I  LKL++EA++REY  LK  K+  LH  +EVKVEK+GE  +VK++  +GEN LV++L
Subjt:  MVSALENRFNSRKKLRLVRSLGTH--ESPGKQRSGFWNSVLFIHKLKLKLEAIEREY--LKSIKE--LHALKEVKVEKMGEEIKVKVRCEKGENRLVSVL

Query:  EALERMRLNVVEARVSCSECFSMEAIAVAED-DQLVNVKDITEAINVAI
        EA E M LNV +AR SC + F+MEAI   +  D+L +V D+T+ +  A+
Subjt:  EALERMRLNVVEARVSCSECFSMEAIAVAED-DQLVNVKDITEAINVAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)6.7e-0631.76Show/hide
Query:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIER----EYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGE-NRLVSVLE
        MVS  + R + ++K +L+RS+ T+       S   ++  +I KLK K+E   +    E   S         V VE + +   + V   K +   LVSVLE
Subjt:  MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIER----EYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGE-NRLVSVLE

Query:  ALERMRLNVVEARVSCSECFSMEAIAVA-EDDQLVNVKDITEAINVAI
        A E + LNV+EAR SC++ FS+ A+ +  ED + ++ + + +A+  AI
Subjt:  ALERMRLNVVEARVSCSECFSMEAIAVA-EDDQLVNVKDITEAINVAI

AT3G56220.1 transcription regulators1.2e-0534.23Show/hide
Query:  MVSALENRFNS-RKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYL--KSIKELHALKE-VKVEKMGEEIKVKVRCEKGE-NRLVSVLE
        MVS    R +S R+K  L+RS+ T      + S   ++  +I KLK K+E I       +S +E       V VE + +   +KV   K E   LV VLE
Subjt:  MVSALENRFNS-RKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYL--KSIKELHALKE-VKVEKMGEEIKVKVRCEKGE-NRLVSVLE

Query:  ALERMRLNVVEARVSCSECFSMEAIAVA--EDDQLVNVKDITEAINVAI
          E + L+VVEARVSC++ FS+ AI  +  +D   ++ + + +A+  AI
Subjt:  ALERMRLNVVEARVSCSECFSMEAIAVA--EDDQLVNVKDITEAINVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTGCATTAGAAAACAGATTCAACTCACGCAAGAAGCTACGCCTTGTTCGATCTCTGGGCACCCATGAATCCCCTGGAAAACAGAGGAGTGGGTTCTGGAACTC
TGTTCTGTTCATTCATAAGCTTAAGCTGAAGCTGGAAGCAATTGAAAGAGAATACTTGAAGTCTATAAAGGAACTCCATGCGCTCAAGGAAGTGAAGGTGGAGAAGATGG
GAGAAGAGATTAAAGTGAAAGTGAGATGCGAGAAGGGAGAGAATAGATTGGTTTCAGTATTAGAAGCATTGGAGAGAATGAGATTGAACGTGGTGGAAGCCAGAGTTTCG
TGTAGTGAATGCTTTTCAATGGAGGCCATTGCTGTAGCTGAAGATGATCAGTTGGTGAATGTAAAAGATATAACTGAAGCTATTAATGTAGCCATTGATGCCTAA
mRNA sequenceShow/hide mRNA sequence
ACTTATCTCAATTGGGAAGCAAGTCGGAGCTGAGAGAGATGGTTTCTGCATTAGAAAACAGATTCAACTCACGCAAGAAGCTACGCCTTGTTCGATCTCTGGGCACCCAT
GAATCCCCTGGAAAACAGAGGAGTGGGTTCTGGAACTCTGTTCTGTTCATTCATAAGCTTAAGCTGAAGCTGGAAGCAATTGAAAGAGAATACTTGAAGTCTATAAAGGA
ACTCCATGCGCTCAAGGAAGTGAAGGTGGAGAAGATGGGAGAAGAGATTAAAGTGAAAGTGAGATGCGAGAAGGGAGAGAATAGATTGGTTTCAGTATTAGAAGCATTGG
AGAGAATGAGATTGAACGTGGTGGAAGCCAGAGTTTCGTGTAGTGAATGCTTTTCAATGGAGGCCATTGCTGTAGCTGAAGATGATCAGTTGGTGAATGTAAAAGATATA
ACTGAAGCTATTAATGTAGCCATTGATGCCTAATCATAAGCTTCACTTCCTTACCCACCACTTGAATCACAATGTTTCTTGATATCTCAAC
Protein sequenceShow/hide protein sequence
MVSALENRFNSRKKLRLVRSLGTHESPGKQRSGFWNSVLFIHKLKLKLEAIEREYLKSIKELHALKEVKVEKMGEEIKVKVRCEKGENRLVSVLEALERMRLNVVEARVS
CSECFSMEAIAVAEDDQLVNVKDITEAINVAIDA