; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh07G002280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G002280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSquamosa promoter-binding-like protein
Genome locationCmo_Chr07:1147680..1148311
RNA-Seq ExpressionCmoCh07G002280
SyntenyCmoCh07G002280
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009908 - flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR017238 - Squamosa promoter-binding protein
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594594.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]4.0e-6998.61Show/hide
Query:  MEHSGDQGWGEPV-EEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF
        MEHSGDQGWGEPV EEEEEEEEEE+DDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF
Subjt:  MEHSGDQGWGEPV-EEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF

Query:  CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

KAG7026565.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-7098.6Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
        MEHSGDQGWGEPVEEEEEEEE++DDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC

Query:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

XP_022926740.1 squamosa promoter-binding-like protein 3 [Cucurbita moschata]5.6e-71100Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
        MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC

Query:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

XP_023004048.1 squamosa promoter-binding-like protein 3 [Cucurbita maxima]7.8e-6593.71Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
        ME+SGDQGWG+PVEEEEEEEEE  DDDDE+GFV+DERKKRA S SRSGSGGGRTSV RCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC

Query:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

XP_023518277.1 squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo]8.6e-6493.01Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
        MEHSGDQGWG+PVEEEEEE+E   DDDDEIGFVKDERKKRA SGSRSG GGGRTSV RCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC

Query:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        QQ  RFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

TrEMBL top hitse value%identityAlignment
A0A0A0KK74 SBP-type domain-containing protein4.8e-4468.06Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF
        M +S DQGW    E+   +++++D+D++EIGFV +ER++R+  + +R G GGGR++V RCQAD CN DL GA+ YHRRHKVCEFHS+AAVVILAGLEQRF
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF

Query:  CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        CQQCSRFH++SEFD+TKRSCR RLAGHNERRRK LPDF GQSST
Subjt:  CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

A0A1S3AZN8 squamosa promoter-binding protein 11.1e-4366.67Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF
        M +S D  W + +    ++++++D+D +E+GFV +ER++R+  +  R G GGGR++V RCQAD CN DL GAR YHRRHKVCEFH+KAAVVILAGLEQRF
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRF

Query:  CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        CQQCSRFH+VSEFD+TKRSCR RLAGHNERRRK LPDF GQSST
Subjt:  CQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

A0A6J1CK81 squamosa promoter-binding protein 15.9e-4273.19Show/hide
Query:  WGEPVEEEEEEEEEEDDDDDEIGFVKDERK-KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFH
        WG   EE+EEEEEE+     E+GF ++ERK +RA SG R G G GR++V RCQAD CN DL+GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH
Subjt:  WGEPVEEEEEEEEEEDDDDDEIGFVKDERK-KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFH

Query:  SVSEFDETKRSCRRRLAGHNERRRKNLPD--FQGQSST
        +VSEFDETKRSCRRRLAGHNERRRK+L      GQSST
Subjt:  SVSEFDETKRSCRRRLAGHNERRRKNLPD--FQGQSST

A0A6J1EFR3 Squamosa promoter-binding-like protein2.7e-71100Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
        MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC

Query:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

A0A6J1KYC6 Squamosa promoter-binding-like protein3.8e-6593.71Show/hide
Query:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
        ME+SGDQGWG+PVEEEEEEEEE  DDDDE+GFV+DERKKRA S SRSGSGGGRTSV RCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC
Subjt:  MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFC

Query:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
        QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST
Subjt:  QQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPDFQGQSST

SwissProt top hitse value%identityAlignment
A2YFT9 Squamosa promoter-binding-like protein 103.6e-2867.06Show/hide
Query:  GSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK
        G GG     PRCQA+ C  DL+GA+ YHRRHKVCE+H+KA+VV  +G +QRFCQQCSRFH ++EFDE KRSCR+RLA HN RRRK
Subjt:  GSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK

P93015 Squamosa promoter-binding-like protein 32.7e-2854.84Show/hide
Query:  VEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEF
        + E  EEEEEE++ +DE  F ++E  ++   G  + S G       CQ +SC  D++ A+ YH+RHKVC+FH+KA  V ++GL QRFCQQCSRFH++SEF
Subjt:  VEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEF

Query:  DETKRSCRRRLAGHNERRRKNLPD
        DE KRSCRRRLAGHNERRRK+  D
Subjt:  DETKRSCRRRLAGHNERRRKNLPD

Q0DAE8 Squamosa promoter-binding-like protein 103.6e-2867.06Show/hide
Query:  GSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK
        G GG     PRCQA+ C  DL+GA+ YHRRHKVCE+H+KA+VV  +G +QRFCQQCSRFH ++EFDE KRSCR+RLA HN RRRK
Subjt:  GSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK

Q6Z461 Squamosa promoter-binding-like protein 138.5e-3065.98Show/hide
Query:  RAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD
        RA  G+ SG GGG    PRCQ + C VDL+ A  Y+RRHKVC+ HSK  VV++AGL QRFCQQCSRFH ++EFD+ KRSCRRRLAGHNERRRK+  D
Subjt:  RAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD

Q700C2 Squamosa promoter-binding-like protein 162.7e-2862.24Show/hide
Query:  KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD
        K+  SGS    GGG  + P+CQ D+C  DL+ A+ YHRRHKVCE HSKA   ++    QRFCQQCSRFH +SEFDE KRSCRRRL GHN RRRK  PD
Subjt:  KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD

Arabidopsis top hitse value%identityAlignment
AT1G02065.1 squamosa promoter binding protein-like 82.5e-2964Show/hide
Query:  DERKKRAASGSRSGSGG--GRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK
        D+   R    SR G  G     S PRCQA+ CN DL+ A+ YHRRHKVCEFHSKA+ V+ AGL QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRRK
Subjt:  DERKKRAASGSRSGSGG--GRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRK

AT1G53160.2 squamosa promoter binding protein-like 47.6e-2651.47Show/hide
Query:  MEHSGDQGWGEPVEEE---EEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQ
        ME    QG G   ++    EE+ E + D+++E+G      + R + GS +  G    S+  CQ D C  D+  A+ YHRRHKVCE H+KA+ V L+GL Q
Subjt:  MEHSGDQGWGEPVEEE---EEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQ

Query:  RFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKN
        RFCQQCSRFH + EFDE KRSCRRRLAGHNERRRK+
Subjt:  RFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKN

AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein4.0e-2756.36Show/hide
Query:  EDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRR
        +DDD    GF    +K RA++             P CQ   C+ DL+ ++ YH+RH+VCE HSK +VVI+ GLEQRFCQQCSRFH +SEFD+ KRSCRRR
Subjt:  EDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRR

Query:  LAGHNERRRK
        LAGHNERRRK
Subjt:  LAGHNERRRK

AT1G76580.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.9e-2962.24Show/hide
Query:  KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD
        K+  SGS    GGG  + P+CQ D+C  DL+ A+ YHRRHKVCE HSKA   ++    QRFCQQCSRFH +SEFDE KRSCRRRL GHN RRRK  PD
Subjt:  KRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRRRLAGHNERRRKNLPD

AT2G33810.1 squamosa promoter binding protein-like 31.9e-2954.84Show/hide
Query:  VEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEF
        + E  EEEEEE++ +DE  F ++E  ++   G  + S G       CQ +SC  D++ A+ YH+RHKVC+FH+KA  V ++GL QRFCQQCSRFH++SEF
Subjt:  VEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEF

Query:  DETKRSCRRRLAGHNERRRKNLPD
        DE KRSCRRRLAGHNERRRK+  D
Subjt:  DETKRSCRRRLAGHNERRRKNLPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACACTCAGGAGATCAAGGTTGGGGGGAACCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGAAATAGGGTTTGTAAAAGACGAGAG
GAAGAAGAGAGCCGCGAGTGGTAGCCGAAGCGGCAGCGGAGGAGGAAGGACTTCGGTGCCGCGTTGTCAAGCCGACAGCTGCAATGTCGATCTGAACGGCGCCAGGGCGT
ACCACCGCCGCCACAAGGTGTGTGAGTTCCATTCCAAGGCAGCGGTGGTGATTTTGGCCGGACTCGAACAGCGCTTTTGCCAACAGTGTAGTAGGTTTCATTCGGTATCA
GAGTTCGATGAGACAAAAAGAAGCTGCCGGAGACGTTTGGCCGGACACAATGAACGGCGGCGAAAAAACTTACCGGACTTCCAGGGACAATCCTCCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACACTCAGGAGATCAAGGTTGGGGGGAACCAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGACGACGACGACGAAATAGGGTTTGTAAAAGACGAGAG
GAAGAAGAGAGCCGCGAGTGGTAGCCGAAGCGGCAGCGGAGGAGGAAGGACTTCGGTGCCGCGTTGTCAAGCCGACAGCTGCAATGTCGATCTGAACGGCGCCAGGGCGT
ACCACCGCCGCCACAAGGTGTGTGAGTTCCATTCCAAGGCAGCGGTGGTGATTTTGGCCGGACTCGAACAGCGCTTTTGCCAACAGTGTAGTAGGTTTCATTCGGTATCA
GAGTTCGATGAGACAAAAAGAAGCTGCCGGAGACGTTTGGCCGGACACAATGAACGGCGGCGAAAAAACTTACCGGACTTCCAGGGACAATCCTCCACTTGACAGTGACC
TAAGAACTACTGATTAATAATGATAATAATAATG
Protein sequenceShow/hide protein sequence
MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAASGSRSGSGGGRTSVPRCQADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVS
EFDETKRSCRRRLAGHNERRRKNLPDFQGQSST