CuGenDBv2

Gene ID	CmoCh07G002380
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Cmo_Chr07:1180884..1181918
RNA-Seq Expression	CmoCh07G002380
Synteny	CmoCh07G002380
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005665 - RNA polymerase II, core complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007642 - RNA polymerase Rpb2, domain 2 IPR007644 - RNA polymerase, beta subunit, protrusion IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037034 - RNA polymerase Rpb2, domain 2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594604.1 DNA-directed RNA polymerase II subunit RPB2, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-105

98.96

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Query:  MEIICNKQLDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRG
        MEIICNKQLDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRG
Subjt:  MEIICNKQLDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRG

Query:  SSGQYIHATLPATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYALSQ
        SSGQYIHATLP T+TEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYALSQ
Subjt:  SSGQYIHATLPATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYALSQ

KAG6604446.1 DNA-directed RNA polymerase II subunit RPB2, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-64

75.57

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

KAG7026573.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-87

96.41

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Query:  KDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIV
        +DLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKY FVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLP T+TEIMIIV
Subjt:  KDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPATQTEIMIIV

Query:  VFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKY
        VFRAR FVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIK+
Subjt:  VFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKY

XP_022142367.1 DNA-directed RNA polymerase II subunit RPB2 [Momordica charantia]

2.6e-64

75.57

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

XP_022925785.1 DNA-directed RNA polymerase II subunit RPB2 [Cucurbita moschata]

2.6e-64

75.57

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UBV7 DNA-directed RNA polymerase subunit beta

4.7e-64

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        + EI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

A0A6J1CMJ7 DNA-directed RNA polymerase subunit beta

1.2e-64

75.57

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

A0A6J1EJ66 DNA-directed RNA polymerase subunit beta

1.2e-64

75.57

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

A0A6J1INB9 DNA-directed RNA polymerase subunit beta

1.2e-64

75.57

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

G7I5Y3 DNA-directed RNA polymerase subunit beta

3.6e-64

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V SMAESQNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRGSTVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

SwissProt top hits

e value

%identity

Alignment

P30876 DNA-directed RNA polymerase II subunit RPB2

1.6e-40

51.96

Show/hide

Query:  SEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSS-------GQYIHATL
        +++DL EL ECP D GGYFIIN SEKVLIAQEKM     YV  K + +KYA+  +  S  E+ +RP +T+     ++ ++ RG         GQ I ATL
Subjt:  SEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSS-------GQYIHATL

Query:  PATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        P  + E+ II+VFRA GFV D+D+LEH+ Y+F D +MME+++ SL+EAFVI  Q VAL  IG RG+  GVTKEKRIKYA
Subjt:  PATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

P38420 DNA-directed RNA polymerase II subunit 2

2.7e-64

72.16

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        L+ NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V SMAE+QNRPP+TMF           GSSGQYI  TLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQ VAL +IGKRG+TVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

Q02061 DNA-directed RNA polymerase II subunit RPB2

5.4e-41

50.28

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Query:  ILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMC--IKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRG--SSGQYIHATL
        IL   S+ +L +L ECPYDQGGYFIIN SEKV+IAQE+    I  V KK  P+  A+V ++ S  E  +R  ++M      ++L+ R   +SGQ I ATL
Subjt:  ILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMC--IKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRG--SSGQYIHATL

Query:  PATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        P  +++I I++VFRA G VPD+D+LEH+CY+  D QM+E+++  +EEAFVI ++ +AL +IGKRGST GVT+EKR++YA
Subjt:  PATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

Q42877 DNA-directed RNA polymerase II subunit RPB2

9.2e-65

72.73

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Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        LY NSEKDL EL ECP DQGGYFIIN SEKVLIAQEKM     YV KK QPNKYAFV +V SMA++QNRPP+TMF           GSSGQYI ATLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQQVAL +IGKRG+TVGVT+EKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

Q54J75 DNA-directed RNA polymerase II subunit rpb2

7.6e-43

51.98

Show/hide

Query:  ILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA
        +L    ++DL  + EC +DQGGYFIIN SEKVLIAQEKM     YV KK  P+KY++V ++ S  E+ +RP +TM+     L    +G  G  I AT+P 
Subjt:  ILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA

Query:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
         + ++ +I+VFRA GFV DKD+LEH+CY+F D QMM+L++ SLEE+FVI +Q+VAL ++GKRGST+G T+E+RIK+A
Subjt:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

Arabidopsis top hits

e value

%identity

Alignment

AT3G18090.1 nuclear RNA polymerase D2B

3.6e-08

27.4

Show/hide

Query:  ILYHNSEKDLAELRE--CPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA
        +L   SEK     ++  C +DQGGYF+I  +EKV IAQE+MC K +     P         W+++       N         E        + +  T+  
Subjt:  ILYHNSEKDLAELRE--CPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA

Query:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEA
          TEI + ++F A G   DK+ ++ + ++  D  +   L +S+ EA
Subjt:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEA

AT3G23780.1 nuclear RNA polymerase D2A

6.2e-08

27.4

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Query:  ILYHNSEKDLAELR--ECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA
        IL   SEK     +  +C +DQGGYF+I  +EKV IAQE+MC K +     P         W+++       N         E        + +  T+  
Subjt:  ILYHNSEKDLAELR--ECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA

Query:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEA
          TEI + ++F A G   DK+ ++ + ++  D  +   L +S+  A
Subjt:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEA

AT3G23780.2 nuclear RNA polymerase D2A

6.2e-08

27.4

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Query:  ILYHNSEKDLAELR--ECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA
        IL   SEK     +  +C +DQGGYF+I  +EKV IAQE+MC K +     P         W+++       N         E        + +  T+  
Subjt:  ILYHNSEKDLAELR--ECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPA

Query:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEA
          TEI + ++F A G   DK+ ++ + ++  D  +   L +S+  A
Subjt:  TQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEA

AT4G21710.1 DNA-directed RNA polymerase family protein

1.9e-65

72.16

Show/hide

Query:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT
        L+ NSEKDL EL ECPYDQGGYFIIN SEKVLIAQEKM     YV KK QPNKYA+V +V SMAE+QNRPP+TMF           GSSGQYI  TLP  
Subjt:  LYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIK--YVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQYIHATLPAT

Query:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA
        +TEI II+VFRA GFV DKD+LEH+CY+F DTQMMELL+ SLEEAFVI NQ VAL +IGKRG+TVGVTKEKRIKYA
Subjt:  QTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYA

AT5G45140.1 nuclear RNA polymerase C2

2.8e-08

27.98

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Query:  LDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYV----SKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQ
        L  C  +L+   E++LA L ECP D GGYFII  +EKVL+ QE++    +     KKG  N  A V     M +S           K  +++       +
Subjt:  LDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYV----SKKGQPNKYAFVEDVWSMAESQNRPPNTMFAHKCFLELVPRGSSGQ

Query:  YIHATLPATQTEIMIIVVFRARGFVPDKDLLEHVCYE-FFDTQMMELLQSSLEEAFVIPNQQVALGHI
         I+  L     +I II+V +A G   D+++++ V  +  F   ++  ++  + E   +  Q+ AL ++
Subjt:  YIHATLPATQTEIMIIVVFRARGFVPDKDLLEHVCYE-FFDTQMMELLQSSLEEAFVIPNQQVALGHI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTGATCCTGTCACTGGAGCTCCTCGATATGTATTGGTATTGCATTTATTCTGGCATATGGAAATTATTTGTAACAAGCAATTAGATTGTTGTCTTTTTATTCTGTA
TCATAATTCTGAGAAGGATCTTGCCGAGCTTAGGGAGTGTCCATATGACCAGGGAGGATATTTTATCATCAATGAGAGTGAGAAGGTTCTTATTGCACAAGAGAAAATGT
GCATAAAATATGTTTCCAAAAAAGGACAGCCAAACAAGTACGCCTTTGTGGAAGACGTCTGGTCTATGGCTGAGTCACAAAATAGACCACCTAATACCATGTTTGCACAC
AAATGCTTTCTTGAACTAGTGCCAAGGGGGTCTTCAGGACAATACATACATGCCACTCTGCCTGCAACCCAAACTGAGATTATGATTATTGTTGTGTTTCGTGCTCGAGG
ATTTGTTCCTGATAAAGATCTTCTAGAGCATGTATGTTATGAATTCTTTGATACTCAAATGATGGAGTTGCTTCAGTCTTCTCTGGAAGAGGCTTTTGTTATACCAAATC
AGCAGGTTGCACTAGGCCATATTGGGAAGAGAGGATCAACAGTTGGTGTGACCAAGGAAAAGAGGATTAAGTATGCATTATCTCAATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTDPVTGAPRYVLVLHLFWHMEIICNKQLDCCLFILYHNSEKDLAELRECPYDQGGYFIINESEKVLIAQEKMCIKYVSKKGQPNKYAFVEDVWSMAESQNRPPNTMFAH
KCFLELVPRGSSGQYIHATLPATQTEIMIIVVFRARGFVPDKDLLEHVCYEFFDTQMMELLQSSLEEAFVIPNQQVALGHIGKRGSTVGVTKEKRIKYALSQ

CmoCh07G002380 (gene) of Cucurbita moschata (Rifu) v1 genome