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CmoCh07G002390 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G002390
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCmo_Chr07:1181972..1184088
RNA-Seq ExpressionCmoCh07G002390
SyntenyCmoCh07G002390
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007642 - RNA polymerase Rpb2, domain 2
IPR015712 - DNA-directed RNA polymerase, subunit 2
IPR037034 - RNA polymerase Rpb2, domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3021541.1 DNA-directed RNA polymerase II subunit RPB2 [Olea europaea subsp. europaea]4.0e-2073.13Show/hide
Query:  MFVILMSRVKEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        +F+ L    KEI Q+EMLPHVGVGE+CETK+AYYFGYIIH LLLCALGR AEDD +H+GNKRLD +G
Subjt:  MFVILMSRVKEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

CAA3021541.1 DNA-directed RNA polymerase II subunit RPB2 [Olea europaea subsp. europaea]7.8e-0890.62Show/hide
Query:  EAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        EAYSDTYT C+IH SLILGVCASIIPFPDHNQ
Subjt:  EAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ

EMS54198.1 DNA-directed RNA polymerase II subunit RPB2 [Triticum urartu]4.0e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

RLN42896.1 DNA-directed RNA polymerase II subunit RPB2 [Panicum miliaceum]4.0e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

VAI21472.1 unnamed protein product [Triticum turgidum subsp. durum]4.0e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

VAI36260.1 unnamed protein product [Triticum turgidum subsp. durum]4.0e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

TrEMBL top hitse value%identityAlignment
A0A0D3FLS5 DNA-directed RNA polymerase subunit beta1.9e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

A0A3L6TTF7 DNA-directed RNA polymerase subunit beta1.9e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

A0A446UKW1 DNA-directed RNA polymerase subunit beta1.9e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

A0A453LQL6 DNA-directed RNA polymerase subunit beta1.9e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

M7YU29 DNA-directed RNA polymerase subunit beta1.9e-2070.59Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC
        KEI Q+EMLPHVGVGEFCETK+AYYFGYIIH LL+CALGR AEDD +H+GNKRLD +G      +  C
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQC

SwissProt top hitse value%identityAlignment
P08266 DNA-directed RNA polymerase II subunit RPB27.3e-1765.52Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        KEI Q+EMLPHVGV +FCETK+AY+ GY++H LLL +LGR   DD +H+GNKRLD +G
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

P08266 DNA-directed RNA polymerase II subunit RPB23.6e-0877.42Show/hide
Query:  AYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        AY  TYT C+IH ++ILGVCASIIPFPDHNQ
Subjt:  AYSDTYTQCDIHSSLILGVCASIIPFPDHNQ

P30876 DNA-directed RNA polymerase II subunit RPB24.3e-1765.52Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        KE+ Q+EMLPHVGV +FCETK+AY+ GY++H LLL ALGR   DD +H+GNKRLD +G
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

P30876 DNA-directed RNA polymerase II subunit RPB21.2e-0880.65Show/hide
Query:  AYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        AY  TYT C+IH S+ILGVCASIIPFPDHNQ
Subjt:  AYSDTYTQCDIHSSLILGVCASIIPFPDHNQ

P38420 DNA-directed RNA polymerase II subunit 23.2e-2074.14Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        ++I Q+EMLPHVG+GE CETK+AYYFGYIIH LLLCALGR  EDD +H+GNKRLD +G
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

P38420 DNA-directed RNA polymerase II subunit 22.5e-0981.25Show/hide
Query:  EAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        EAY++ YT C+IH SLILGVCASIIPFPDHNQ
Subjt:  EAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ

Q42877 DNA-directed RNA polymerase II subunit RPB24.4e-2281.03Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        KEI Q+EMLPHVGVGE+CETK+AYYFGYIIH LLLCALGR AEDD +H+GNKRLD +G
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

Q42877 DNA-directed RNA polymerase II subunit RPB24.6e-1187.88Show/hide
Query:  GEAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        G+AYSDTYT C+IH SLILGVCASIIPFPDHNQ
Subjt:  GEAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ

Q8CFI7 DNA-directed RNA polymerase II subunit RPB24.3e-1765.52Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        KE+ Q+EMLPHVGV +FCETK+AY+ GY++H LLL ALGR   DD +H+GNKRLD +G
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

Q8CFI7 DNA-directed RNA polymerase II subunit RPB21.2e-0880.65Show/hide
Query:  AYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        AY  TYT C+IH S+ILGVCASIIPFPDHNQ
Subjt:  AYSDTYTQCDIHSSLILGVCASIIPFPDHNQ

Arabidopsis top hitse value%identityAlignment
AT4G21710.1 DNA-directed RNA polymerase family protein2.2e-2174.14Show/hide
Query:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG
        ++I Q+EMLPHVG+GE CETK+AYYFGYIIH LLLCALGR  EDD +H+GNKRLD +G
Subjt:  KEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSG

AT4G21710.1 DNA-directed RNA polymerase family protein1.8e-1081.25Show/hide
Query:  EAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ
        EAY++ YT C+IH SLILGVCASIIPFPDHNQ
Subjt:  EAYSDTYTQCDIHSSLILGVCASIIPFPDHNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTTATCTTAATGTCTCGGGTCAAAGAGATTCCTCAAGAGGAAATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGCATACTATTTTGGTTA
TATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGATAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGCGAGGCTTATTCTGACACCT
ACACTCAGTGTGACATCCATTCATCACTGATTTTGGGCGTTTGTGCTTCAATTATTCCATTTCCTGACCATAATCAGGTTAGGACTACTCCAGATGATAAGCAGTCTGGA
GCGGTTGCTCCCCTTATTCCAATTGCATACTCAGATTTTGAATCTTTATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTTATCTTAATGTCTCGGGTCAAAGAGATTCCTCAAGAGGAAATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGCATACTATTTTGGTTA
TATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGATAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGCGAGGCTTATTCTGACACCT
ACACTCAGTGTGACATCCATTCATCACTGATTTTGGGCGTTTGTGCTTCAATTATTCCATTTCCTGACCATAATCAGGTTAGGACTACTCCAGATGATAAGCAGTCTGGA
GCGGTTGCTCCCCTTATTCCAATTGCATACTCAGATTTTGAATCTTTATCTTAG
Protein sequenceShow/hide protein sequence
MFVILMSRVKEIPQEEMLPHVGVGEFCETKEAYYFGYIIHPLLLCALGRIAEDDGNHFGNKRLDFSGEAYSDTYTQCDIHSSLILGVCASIIPFPDHNQVRTTPDDKQSG
AVAPLIPIAYSDFESLS