CuGenDBv2

Gene ID	CmoCh07G002630
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ribosomal RNA-processing protein 17
Genome location	Cmo_Chr07:1290696..1293605
RNA-Seq Expression	CmoCh07G002630
Synteny	CmoCh07G002630
Gene Ontology terms	GO:0005730 - nucleolus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019186 - Nucleolar protein 12

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594625.1 hypothetical protein SDJN03_11178, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-90

97.47

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETT YDSGNIKVTVTTSEVRRDEEI+PIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

KAG7026594.1 hypothetical protein SDJN02_10596, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.0e-91

97.98

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEE+PLAPISETT YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

XP_022926799.1 ribosomal RNA-processing protein 17 [Cucurbita moschata]

7.2e-93

100

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

XP_023003425.1 ribosomal RNA-processing protein 17 [Cucurbita maxima]

7.4e-90

96.97

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEEKPLAPISETT YDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

XP_023517913.1 ribosomal RNA-processing protein 17 [Cucurbita pepo subsp. pepo]

1.4e-91

98.48

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEK+LVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEEKPLAPISETT YDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLP+TKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYB4 Uncharacterized protein

3.9e-68

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKN+ EEGG L QPHARHIKK+AL+NKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVLHGGVLPADR VD+QND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        D      +EEE+PLAP+SE T YD+GN+KVTVTTSEV R++EIDPIDKPQ +  T+QLL KDKKH+LPITKKK FKKVA+++ R K RSK DKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQAS--TSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A1S3C1A3 ribosomal RNA-processing protein 17

4.6e-69

79.29

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKN+ EEGG L QPHARHIKK+ALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQ+EEA RR RIE RKKRK+EKDLVL+GGVLPADR VD+QND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        D     EDEEE+PLAP SE   YD+GN+KVTVTTSEV R+ EIDPIDKPQ + +QLL KDKKH+LPITKKK FKKVA+++SR K RSK DKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A6J1CL67 ribosomal RNA-processing protein 17-like

1.4e-70

81.31

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKN+ +EGG L QP  RHIKK+ALKNKAL+VSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIE RKKRK EK+LVL+GG+LPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        D     E+EEEKP APISETT YDSGNIKVTV TSEV RD EI PIDK Q +T+QL+AKDKKH+LPITKKKPFKKVA++KSR K RSK DKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A6J1EG67 ribosomal RNA-processing protein 17

3.5e-93

100

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

A0A6J1KRQ7 ribosomal RNA-processing protein 17

3.6e-90

96.97

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Query:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
        MVKNEA EGGALTQP++RH+KKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND
Subjt:  MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQND

Query:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
        DLKDGDEDEEEKPLAPISETT YDSGNIKVTVTTSEVRR+EEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK
Subjt:  DLKDGDEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G11240.1 CONTAINS InterPro DOMAIN/s: Nucleolar protein 12 (InterPro:IPR019186); Has 2484 Blast hits to 1934 proteins in 262 species: Archae - 0; Bacteria - 90; Metazoa - 921; Fungi - 378; Plants - 144; Viruses - 18; Other Eukaryotes - 933 (source: NCBI BLink).

1.4e-33

54.45

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Query:  EEGGALTQP-HARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDG
        EE G+L  P  ARHI K+A KNK+L+VSF+EKDL+D+VTGFHKRKKKRRKEA+KQQEEA RRKRIE RK RK+E+ +V   G    D   +++ D     
Subjt:  EEGGALTQP-HARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDG

Query:  DEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPI--DKPQASTSQLLAK-DKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKK
         EDEE +P A  S TTMYD+G +KVTVTTSE+ R+EE +PI  +K Q++ S   AK   K  +P+ K KP K+ +R++S +K+  K DKKK
Subjt:  DEDEEEKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPI--DKPQASTSQLLAK-DKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKK

Sequences

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CDS sequence

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ATGGTGAAGAACGAAGCGGAGGAAGGGGGGGCGCTCACACAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAA
AGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAAGAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCA
AAAAGAGAAAAATAGAAAAAGATCTGGTGCTACATGGCGGTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAACGATGATCTCAAGGACGGGGATGAGGATGAGGAA
GAGAAGCCATTGGCACCAATTTCTGAGACAACAATGTATGACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATTGATCCCATTGA
CAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGATAAGAAGCACAGCCTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAA
AGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAAAGAAATAG

mRNA sequence

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CTTGGTATTAGGTGTCCCCCGCCGCGCGAACCGAATTTAATGTGACGCAGAGAGTGTTACTGGGCGCTGCGATGGTGAAGAACGAAGCGGAGGAAGGGGGGGCGCTCACA
CAGCCTCATGCTCGACACATAAAGAAGAAAGCTCTAAAGAACAAAGCTCTTTCTGTTTCTTTCAATGAGAAAGACTTGAGGGACTATGTAACTGGATTTCACAAGAGGAA
GAAGAAAAGGAGAAAGGAAGCGGAAAAGCAACAAGAGGAAGCTAAGCGGCGGAAGCGCATCGAAGAACGCAAAAAGAGAAAAATAGAAAAAGATCTGGTGCTACATGGCG
GTGTTCTACCAGCTGACCGGCCAGTTGATGAGCAGAACGATGATCTCAAGGACGGGGATGAGGATGAGGAAGAGAAGCCATTGGCACCAATTTCTGAGACAACAATGTAT
GACAGTGGAAACATCAAAGTCACTGTGACAACAAGTGAGGTACGTCGTGACGAAGAAATTGATCCCATTGACAAGCCACAGGCATCAACATCCCAACTTCTTGCAAAGGA
TAAGAAGCACAGCCTGCCAATTACCAAAAAGAAGCCATTCAAGAAAGTTGCAAGAAAGAAGTCAAGGTCAAAGTCCCGTAGTAAAACAGACAAAAAGAAAGGAAGGAAAA
AGAAATAGGTAATACTAAAAGCTTTTTGCTCACTCTTTTCTAAATCTGCAATGTAATGACTTATATGTTATCTCTTGAGAATAGGGTGTGATCTTGAGAATGGGCTGGTA
GGGGGTTTGAGGGTTTTGTATTACTTTGTAAAAGGTTGGCCATTTTGCAAACTGAAAGTGCAATTTTCTTTTTTATGAGAAGCTGAAATGATTCTCTCATTATTCCAAGA
AGACAAACATTAGATTGCAACTCATCTAAGA

Protein sequence

Show/hide protein sequence

MVKNEAEEGGALTQPHARHIKKKALKNKALSVSFNEKDLRDYVTGFHKRKKKRRKEAEKQQEEAKRRKRIEERKKRKIEKDLVLHGGVLPADRPVDEQNDDLKDGDEDEE
EKPLAPISETTMYDSGNIKVTVTTSEVRRDEEIDPIDKPQASTSQLLAKDKKHSLPITKKKPFKKVARKKSRSKSRSKTDKKKGRKKK

CmoCh07G002630 (gene) of Cucurbita moschata (Rifu) v1 genome