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CmoCh07G003140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G003140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransporter associated with antigen processing protein 1
Genome locationCmo_Chr07:1508714..1509424
RNA-Seq ExpressionCmoCh07G003140
SyntenyCmoCh07G003140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER29204.1 transporter associated with antigen processing protein 1, partial [Striga asiatica]8.9e-0835.19Show/hide
Query:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQRCRTLGNREVGFRVEGEGSGGA
        V++  PA+ Q++L  ET   D N+K   NPI  +L I +   S  PPI+T +  A+  H   R+  L +IRAA   F R       E G  VE E   G 
Subjt:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQRCRTLGNREVGFRVEGEGSGGA

Query:  KVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG
        ++  V A PHV V + ++ + VAY  +   +G   E++L    A+++V VV AA AV+   G
Subjt:  KVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG

KAG7026644.1 hypothetical protein SDJN02_10647, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-4897.22Show/hide
Query:  MIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGT
        MIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRV SAVLEHQLQRIHGLGMIRAAGT
Subjt:  MIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGT

Query:  SFQRCRTL
        SFQR  TL
Subjt:  SFQRCRTL

PON52123.1 hypothetical protein PanWU01x14_211130, partial [Parasponia andersonii]2.0e-2037.87Show/hide
Query:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAA------GTS
        +S  I   T A E  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A       ++
Subjt:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAA------GTS

Query:  FQRCRTL----------------------------------------------GNREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE
         +R  TL                                              G  EVG  VE +GSGGA V  VLAVPH  VG +++ IG VAYG NR 
Subjt:  FQRCRTL----------------------------------------------GNREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE

Query:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM
         SG  SE+++    A+K+V+VV A AAVV AE V+
Subjt:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM

PON91268.1 hypothetical protein TorRG33x02_128310, partial [Trema orientale]2.0e-2037.87Show/hide
Query:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------
        +S  +   T AQE  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A +S      
Subjt:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------

Query:  FQRCRTLG----------------------------NREVGFR------------------VEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE
         +R  TLG                            +  VGF                   VE + SGG +V  VLAVPH  VG +++ IG VAYG NR 
Subjt:  FQRCRTLG----------------------------NREVGFR------------------VEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE

Query:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM
         SG  S++E+    A K+V+VV AAAAVV AE V+
Subjt:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM

RDX70635.1 hypothetical protein CR513_50104, partial [Mucuna pruriens]1.7e-1134.05Show/hide
Query:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQR------------------CRT
        +KST   + Q ILA +    D NIKINS+PIF  LII    S+N  PI+  + S +LEHQ QR+ G G++RAA T+ +R                     
Subjt:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQR------------------CRT

Query:  LG----------------------------NREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVEL
        LG                              EVG  V+ EG   AK+ +VLA PH GV +  +RI VA   N       SE++L
Subjt:  LG----------------------------NREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVEL

TrEMBL top hitse value%identityAlignment
A0A2P5BTK1 Uncharacterized protein (Fragment)9.9e-2137.87Show/hide
Query:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAA------GTS
        +S  I   T A E  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A       ++
Subjt:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAA------GTS

Query:  FQRCRTL----------------------------------------------GNREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE
         +R  TL                                              G  EVG  VE +GSGGA V  VLAVPH  VG +++ IG VAYG NR 
Subjt:  FQRCRTL----------------------------------------------GNREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE

Query:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM
         SG  SE+++    A+K+V+VV A AAVV AE V+
Subjt:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM

A0A2P5F0F7 Uncharacterized protein (Fragment)9.9e-2137.87Show/hide
Query:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------
        +S  +   T AQE  R+N+K T PA+L +ILA +T  S  N+K+NS+PIF  LII L   ++ PPIH  V   +L+HQ QR+    +IR A +S      
Subjt:  VSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTS------

Query:  FQRCRTLG----------------------------NREVGFR------------------VEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE
         +R  TLG                            +  VGF                   VE + SGG +V  VLAVPH  VG +++ IG VAYG NR 
Subjt:  FQRCRTLG----------------------------NREVGFR------------------VEGEGSGGAKVWTVLAVPHVGVGNEDIRIG-VAYGGNRE

Query:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM
         SG  S++E+    A K+V+VV AAAAVV AE V+
Subjt:  CSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVM

A0A371EX53 Uncharacterized protein (Fragment)8.4e-1234.05Show/hide
Query:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQR------------------CRT
        +KST   + Q ILA +    D NIKINS+PIF  LII    S+N  PI+  + S +LEHQ QR+ G G++RAA T+ +R                     
Subjt:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQR------------------CRT

Query:  LG----------------------------NREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVEL
        LG                              EVG  V+ EG   AK+ +VLA PH GV +  +RI VA   N       SE++L
Subjt:  LG----------------------------NREVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVEL

A0A5A7P9E7 Transporter associated with antigen processing protein 1 (Fragment)4.3e-0835.19Show/hide
Query:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQRCRTLGNREVGFRVEGEGSGGA
        V++  PA+ Q++L  ET   D N+K   NPI  +L I +   S  PPI+T +  A+  H   R+  L +IRAA   F R       E G  VE E   G 
Subjt:  VKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQRCRTLGNREVGFRVEGEGSGGA

Query:  KVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG
        ++  V A PHV V + ++ + VAY  +   +G   E++L    A+++V VV AA AV+   G
Subjt:  KVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACAT
CCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATAC
ACACTCGTGTAGGTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCTGTCGCACACTGGGAAAC
CGTGAGGTGGGTTTCCGGGTCGAGGGTGAAGGGTCGGGTGGGGCGAAAGTTTGGACCGTCTTGGCAGTTCCACATGTCGGGGTTGGAAATGAGGATATAAGGATCGGAGT
AGCTTATGGCGGAAACAGGGAATGTTCCGGAGGGTGTTCGGAGGTGGAGTTGGTCGGAGGCTGTGCAGAAAAGAAGGTTGCGGTAGTAGAGGCTGCCGCAGCCGTCGTCT
ATGCCGAAGGGGTAATGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTGGGATACCTTCACAGTAAGTAGTGACATTCTTGTCATTACAAATGCACAAGAAGCCAAGAGATTGAACGTCAAATCCACAGGACCCGCCGCCCTTCAAAACAT
CCTGGCAACGGAGACAAGAAGTAGTGACAACAATATCAAAATCAATTCGAATCCCATATTCAGCCACTTGATCATAAGCCTCATTCACTCCTCCAATGCTCCTCCAATAC
ACACTCGTGTAGGTAGCGCAGTACTTGAGCATCAGCTTCAAAGAATCCATGGCCTTGGGATGATAAGAGCAGCAGGAACTTCCTTCCAGCGCTGTCGCACACTGGGAAAC
CGTGAGGTGGGTTTCCGGGTCGAGGGTGAAGGGTCGGGTGGGGCGAAAGTTTGGACCGTCTTGGCAGTTCCACATGTCGGGGTTGGAAATGAGGATATAAGGATCGGAGT
AGCTTATGGCGGAAACAGGGAATGTTCCGGAGGGTGTTCGGAGGTGGAGTTGGTCGGAGGCTGTGCAGAAAAGAAGGTTGCGGTAGTAGAGGCTGCCGCAGCCGTCGTCT
ATGCCGAAGGGGTAATGGATTGA
Protein sequenceShow/hide protein sequence
MIWDTFTVSSDILVITNAQEAKRLNVKSTGPAALQNILATETRSSDNNIKINSNPIFSHLIISLIHSSNAPPIHTRVGSAVLEHQLQRIHGLGMIRAAGTSFQRCRTLGN
REVGFRVEGEGSGGAKVWTVLAVPHVGVGNEDIRIGVAYGGNRECSGGCSEVELVGGCAEKKVAVVEAAAAVVYAEGVMD