CuGenDBv2

Gene ID	CmoCh07G003180
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	Cmo_Chr07:1516336..1516974
RNA-Seq Expression	CmoCh07G003180
Synteny	CmoCh07G003180
Gene Ontology terms	GO:0006270 - DNA replication initiation (biological process) GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0033314 - mitotic DNA replication checkpoint (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0005664 - nuclear origin of replication recognition complex (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003688 - DNA replication origin binding (molecular function)
InterPro domains	IPR038052 - Chaperonin-like RbcX superfamily IPR003435 - Chaperonin-like RbcX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594678.1 Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-63

99.18

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKA ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFLSNLMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

7.5e-59

82.31

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE-----------------
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKA ASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE                 
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLE-----------------

Query:  --------SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSL
                SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSL
Subjt:  --------SYNPEAHAELMEFLDRHSLNDGDKFLSNLMRESSRHKSL

XP_022926897.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata]

7.8e-64

100

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFLSNLMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

5.6e-62

97.54

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MESCARILSPTHFPSLFP PNLNRSNFNPVWPKK EASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAH ELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFLSNLMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

3.6e-61

95.9

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MESCARILSPTHFPS+FP PNLNR NFNPVWP+K EASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFLSNLMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B054 uncharacterized protein LOC103484635

6.9e-50

83.61

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFL++LMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

A0A5D3CNU4 Chaperonin-like RBCX protein 1

6.9e-50

83.61

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MES ARILSPT FPS+F  PNLNR N  PV P K  ASKS+RLHC KMYVPGFGEASPE+KAA+NLHNFFTYVAVRIVTAQLESYNPEA+ ELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFL++LMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

A0A6J1BTL5 chaperonin-like RBCX protein 1, chloroplastic

6.2e-51

83.87

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASK--SLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLD
        MES AR+LSPT FPSLFP PNLNRS   P+WP K +ASK   L+L CHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIV AQLESYNPEAH ELMEFLD
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASK--SLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLD

Query:  RHSLNDGDKFLSNLMRESSRHKSL
        RHSLNDGDKFL++LMRESSRHKSL
Subjt:  RHSLNDGDKFLSNLMRESSRHKSL

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

3.8e-64

100

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFLSNLMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

2.7e-62

97.54

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MESCARILSPTHFPSLFP PNLNRSNFNPVWPKK EASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAH ELMEFLDRH
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        SLNDGDKFLSNLMRESSRHKSL
Subjt:  SLNDGDKFLSNLMRESSRHKSL

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

2.9e-29

56.56

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYNPEA+ EL EFLD +
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        S++DGDKF + LMR SSRH +L
Subjt:  SLNDGDKFLSNLMRESSRHKSL

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

2.1e-30

56.56

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Query:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH
        MES + +L  ++   L P+         P+  + +   K  R+  +KMYVPGFGEASPEAKAAK+LH+FFTYVAVRIV+AQLESYNPEA+ EL EFLD +
Subjt:  MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRH

Query:  SLNDGDKFLSNLMRESSRHKSL
        S++DGDKF + LMR SSRH +L
Subjt:  SLNDGDKFLSNLMRESSRHKSL

Sequences

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CDS sequence

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ATGGAATCATGTGCAAGGATTCTCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCA
GAAGCTTCCAAGTCTTTGCGCTTGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTC
ACGTATGTTGCTGTTAGGATCGTGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGG
GACAAGTTCCTGAGCAATTTGATGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

mRNA sequence

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GAAAGCTCGAGGCAAAATATCTCTCTCTCGCTCTCTGGTTCCAGTTTTCTTGTGAAGCAGTTCGATAAAGCTCGAGGCCATCTATGGAATCATGTGCAAGGATTC
TCTCCCCTACTCACTTCCCTTCTCTTTTCCCACGGCCCAATTTAAACAGAAGCAATTTCAATCCAGTTTGGCCAAAAAAGGCAGAAGCTTCCAAGTCTTTGCGCT
TGCATTGCCATAAGATGTATGTCCCCGGGTTTGGAGAAGCGTCGCCCGAAGCGAAGGCAGCCAAGAATCTGCACAATTTCTTCACGTATGTTGCTGTTAGGATCG
TGACTGCGCAGCTTGAGAGCTACAATCCAGAGGCGCACGCAGAATTAATGGAGTTTCTTGATAGGCATTCACTGAACGATGGGGACAAGTTCCTGAGCAATTTGA
TGCGGGAATCCTCAAGGCATAAGAGTCTCGGTAAAACCCAATTCTACACTTGA

Protein sequence

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MESCARILSPTHFPSLFPRPNLNRSNFNPVWPKKAEASKSLRLHCHKMYVPGFGEASPEAKAAKNLHNFFTYVAVRIVTAQLESYNPEAHAELMEFLDRHSLNDG
DKFLSNLMRESSRHKSLGKTQFYT

CmoCh07G003180 (gene) of Cucurbita moschata (Rifu) v1 genome