CuGenDBv2

Gene ID	CmoCh07G003190
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	chaperonin-like RBCX protein 1, chloroplastic
Genome location	Cmo_Chr07:1517039..1517584
RNA-Seq Expression	CmoCh07G003190
Synteny	CmoCh07G003190
Gene Ontology terms	GO:0009409 - response to cold (biological process) GO:0009414 - response to water deprivation (biological process) GO:0009651 - response to salt stress (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0110102 - chloroplast ribulose bisphosphate carboxylase complex assembly (biological process) GO:0009534 - chloroplast thylakoid (cellular component) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR003435 - Chaperonin-like RbcX IPR038052 - Chaperonin-like RbcX superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594678.1 Chaperonin-like RBCX protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

8.4e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

KAG7026647.1 Chaperonin-like RBCX protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

XP_022926897.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita moschata]

8.4e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

XP_023003335.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita maxima]

8.4e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

XP_023518339.1 chaperonin-like RBCX protein 1, chloroplastic [Cucurbita pepo subsp. pepo]

8.4e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

TrEMBL top hits

e value

%identity

Alignment

A0A5D3CNU4 Chaperonin-like RBCX protein 1

5.5e-16

90.2

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK
        ALRILEVRSAYCKNDFEWDNLKRLA KMVGESNTR+MREY+TETSP D EK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSP-DAEK

A0A6J1B712 chaperonin-like RBCX protein 1, chloroplastic isoform X2

5.5e-16

86.54

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Query:  GTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        G ALRILEVRSAYCK+DFEWDNLKRLASKMV ESNT+LMREYV ETSP  EK
Subjt:  GTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

A0A6J1B9I4 chaperonin-like RBCX protein 1, chloroplastic isoform X1

5.5e-16

86.54

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Query:  GTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        G ALRILEVRSAYCK+DFEWDNLKRLASKMV ESNT+LMREYV ETSP  EK
Subjt:  GTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

A0A6J1EFL9 chaperonin-like RBCX protein 1, chloroplastic

4.1e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

A0A6J1KRH1 chaperonin-like RBCX protein 1, chloroplastic

4.1e-19

100

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
        ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

SwissProt top hits

e value

%identity

Alignment

Q94AU9 Chaperonin-like RBCX protein 1, chloroplastic

4.5e-15

86.67

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS
        ALRILEVRSAYCKNDFEWDN+KRLA K V +SNTRLMREYV ETS
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS

Arabidopsis top hits

e value

%identity

Alignment

AT4G04330.1 Chaperonin-like RbcX protein

3.2e-16

86.67

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Query:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS
        ALRILEVRSAYCKNDFEWDN+KRLA K V +SNTRLMREYV ETS
Subjt:  ALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETS

Sequences

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CDS sequence

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ATGAGCCTTAAACTGATGGTTAAATTCATGGCTGGGGGGACAGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCG
ATTAGCATCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGA

mRNA sequence

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ATGAGCCTTAAACTGATGGTTAAATTCATGGCTGGGGGGACAGCATTGCGCATACTAGAGGTTCGATCTGCATACTGCAAAAACGATTTCGAATGGGACAACCTCAAGCG
ATTAGCATCCAAAATGGTTGGTGAATCTAACACGAGACTGATGAGGGAATATGTGACAGAGACGAGTCCAGATGCCGAAAAGTGAGGAAATTCTGCACCTTCTGTTTTTG
CTATTATTATACATGAATTCAGTGTATTTATAATATGATCATGCCACTCCACTTGTTGGGGCTTTGTTCCAAACAAAAATTGGTAAACTCAATCATGGAAATATATACAG
ATTGAATTGTTCTTGTGAGTTACAAAATGTCATAATGAAATAGAACAG

Protein sequence

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MSLKLMVKFMAGGTALRILEVRSAYCKNDFEWDNLKRLASKMVGESNTRLMREYVTETSPDAEK

CmoCh07G003190 (gene) of Cucurbita moschata (Rifu) v1 genome