; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh07G003770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G003770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein L11
Genome locationCmo_Chr07:1732618..1733085
RNA-Seq ExpressionCmoCh07G003770
SyntenyCmoCh07G003770
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000911 - Ribosomal protein L11/L12
IPR006519 - Ribosomal protein L11, bacterial-type
IPR020783 - Ribosomal protein L11, C-terminal
IPR020784 - Ribosomal protein L11, N-terminal
IPR036769 - Ribosomal protein L11, C-terminal domain superfamily
IPR036796 - Ribosomal protein L11/L12, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594732.1 hypothetical protein SDJN03_11285, partial [Cucurbita argyrosperma subsp. sororia]3.9e-7898.06Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVA TIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES SGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSD YCQYMPLESICKSIIGTANNMGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

KAG7026702.1 mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-7998.71Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES SGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKV+QSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

XP_022926601.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita moschata]1.1e-80100Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

XP_023003939.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima]7.4e-7796.13Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES S R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAN+ GIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

XP_023518358.1 54S ribosomal protein L19, mitochondrial-like [Cucurbita pepo subsp. pepo]7.4e-7796.13Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAA IRLTVPAGGARPAP VGPALG+YRLNLMAFCKDF ARTQKYKADTPMAVTITAFKDNTF+FTVKSPSVTWYLKKSAGIES SGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

TrEMBL top hitse value%identityAlignment
A0A6J1BU21 54S ribosomal protein L19, mitochondrial3.0e-7694.19Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK DTPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGI+S S R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAN+MGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

A0A6J1EFD1 54S ribosomal protein L19, mitochondrial-like5.3e-81100Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

A0A6J1GG89 54S ribosomal protein L19, mitochondrial-like3.9e-7693.55Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK DTPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIES SGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTL++KHIY+IAKVKQSDP+CQYMPLESICKSIIGTAN+MGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

A0A6J1IPM9 54S ribosomal protein L19, mitochondrial-like6.1e-7794.84Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK DTPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIES SGR
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTL+LKHIY+IAKVKQSDPYCQYMPLESICKSIIGTAN+MGIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

A0A6J1KUS1 54S ribosomal protein L19, mitochondrial-like3.6e-7796.13Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIES S R
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAN+ GIKVVKELD
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

SwissProt top hitse value%identityAlignment
A7HWQ0 50S ribosomal protein L118.0e-2642.96Show/hide
Query:  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS
        + +   I+L VPAG A P+PP+GPALG+  LN+M FCK F A TQK +   P+ V ITAF D +F F +K+P  +++LKK+A + S S  PG   A T++
Subjt:  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS

Query:  LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVK
        +    EIA+ K +D       L+   K I G+A +MG++VV+
Subjt:  LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVK

Q07KJ7 50S ribosomal protein L113.6e-2642.86Show/hide
Query:  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS
        + V   ++L VPAG A P+PP+GPALG+  LN+M FCK+F A+TQK + +TP+ V IT + D +F F +K+P ++++LK++A I+S S  PG  VA  +S
Subjt:  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS

Query:  LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKV
           + EIA+ K  D  C    +ES  + + G+A +MG++V
Subjt:  LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKV

Q9UTK2 54S ribosomal protein L19, mitochondrial1.3e-3149.63Show/hide
Query:  IRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLSLKHIYE
        I+L VPAG A P PP+GPALG   L  + FCK+F ART  +  +TP+   IT     TF FT+ +P  +W + K+  +E  S  P H +   LSLKHIYE
Subjt:  IRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLSLKHIYE

Query:  IAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVV
        IAK+K +DP  Q + L S+CKS+IGTA +MG+KVV
Subjt:  IAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVV

Q9VFJ2 39S ribosomal protein L11, mitochondrial7.3e-2736.77Show/hide
Query:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR
        + +LK+ + R    + ++  +PAG A   PP+GP LG+  +N+ AFCKDF A+T + K   P+   I+   D +++  +  P  T++LK++AGI+  +  
Subjt:  MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGR

Query:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        PG  VA  ++LKH+YEIA +K  DP    + ++ +C+ +I  A   GIKVV+E+D
Subjt:  PGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

Q9Y3B7 39S ribosomal protein L11, mitochondrial1.6e-2642.28Show/hide
Query:  LTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVAS
        L +  V   IR  V AG A P PP+GP LG+  +++  FCK+F  RT+  K   P+   I    D TFE  +  P+V+++LK +AGIE  + + G  VA 
Subjt:  LTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVAS

Query:  TLSLKHIYEIAKVKQSDP--YCQYMPLESICKSIIGTANNMGIKVVKEL
         ++LKH+YEIA++K  D     Q +PL S+ +SIIG+A ++GI+VVK+L
Subjt:  TLSLKHIYEIAKVKQSDP--YCQYMPLESICKSIIGTANNMGIKVVKEL

Arabidopsis top hitse value%identityAlignment
AT1G32990.1 plastid ribosomal protein l113.6e-2142.14Show/hide
Query:  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS
        + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+ ART   KA   + V IT F D +F F +K+P  +  L K+AG+E  S  P       ++
Subjt:  RPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS

Query:  LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKV
        +  +  IA  K  D  C    +ES  + I GTA NMGI +
Subjt:  LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKV

AT4G35490.1 mitochondrial ribosomal protein L111.6e-6980.52Show/hide
Query:  ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRP
        A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALG+YRLNLMAFCKDF ARTQKYK DTPMAVTITAFKDN+FEFTVKSP+V+WY+KK+AG++  S RP
Subjt:  ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRP

Query:  GHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD
        GH+  +TLS++H+YEIAKVKQ+DP+CQYMPLESICKSIIGTAN+MGIK+V++L+
Subjt:  GHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD

AT5G51610.1 Ribosomal protein L11 family protein3.3e-0631.65Show/hide
Query:  DNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKV
        D +F F +K+P  ++ L K+AG++  S  P  +    +++  + +IA+VK  +  C    + S  ++I GTA NMGI +
Subjt:  DNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLSLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTTTGAAAGAGATCCTAACTAGGCGACCCGTCGCCGCCACCATCAGGCTCACTGTCCCTGCCGGCGGAGCTCGGCCAGCGCCACCGGTGGGTCCGGCGCTTGG
TAAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCACTGCCCGAACTCAGAAGTACAAGGCGGACACACCCATGGCCGTCACCATCACGGCTTTTAAGGACAACA
CCTTCGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAATCCGCCGGGATCGAGTCTGAGAGCGGCCGCCCAGGCCATGTGGTCGCCTCCACGCTTTCC
CTCAAGCACATTTACGAGATCGCGAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCATTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAACATGGG
AATTAAGGTTGTTAAGGAATTGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTTTGAAAGAGATCCTAACTAGGCGACCCGTCGCCGCCACCATCAGGCTCACTGTCCCTGCCGGCGGAGCTCGGCCAGCGCCACCGGTGGGTCCGGCGCTTGG
TAAGTACCGGCTGAATCTGATGGCCTTCTGCAAGGATTTCACTGCCCGAACTCAGAAGTACAAGGCGGACACACCCATGGCCGTCACCATCACGGCTTTTAAGGACAACA
CCTTCGAGTTCACCGTCAAGTCGCCGTCGGTCACTTGGTACCTGAAGAAATCCGCCGGGATCGAGTCTGAGAGCGGCCGCCCAGGCCATGTGGTCGCCTCCACGCTTTCC
CTCAAGCACATTTACGAGATCGCGAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCATTAGAGTCCATTTGTAAGTCCATTATCGGCACTGCCAATAACATGGG
AATTAAGGTTGTTAAGGAATTGGATTAA
Protein sequenceShow/hide protein sequence
MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGKYRLNLMAFCKDFTARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESESGRPGHVVASTLS
LKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANNMGIKVVKELD