; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh07G004330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G004330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 14b
Genome locationCmo_Chr07:1988935..1989942
RNA-Seq ExpressionCmoCh07G004330
SyntenyCmoCh07G004330
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009639 - response to red or far red light (biological process)
GO:0009959 - negative gravitropism (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsIPR005033 - YEATS
IPR038704 - YEATS superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594781.1 Transcription initiation factor TFIID subunit 14b, partial [Cucurbita argyrosperma subsp. sororia]2.8e-6497.6Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENF ARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS

Query:  VMDGLPQFSKPIAGYELTAANGVHP
        VMDGLPQFSKPIAGYELTAANGVHP
Subjt:  VMDGLPQFSKPIAGYELTAANGVHP

KAG6603918.1 Transcription initiation factor TFIID subunit 14b, partial [Cucurbita argyrosperma subsp. sororia]4.7e-5179.56Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP ENF ARVQNHPAVVVP                   RER DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT

KAG7026746.1 Transcription initiation factor TFIID subunit 14b, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-6497.6Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENF ARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQLS

Query:  VMDGLPQFSKPIAGYELTAANGVHP
        VMDGLPQFSKPIAGYELTAANGVHP
Subjt:  VMDGLPQFSKPIAGYELTAANGVHP

XP_022950839.1 transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita moschata]2.3e-5078.83Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP ENF ARVQN+PAVVVP                   RER DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT

XP_023544997.1 transcription initiation factor TFIID subunit 14b-like isoform X1 [Cucurbita pepo subsp. pepo]4.7e-5179.56Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP ENF ARVQNHPAVVVP                   RER DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT

TrEMBL top hitse value%identityAlignment
A0A0A0KJC2 Uncharacterized protein7.3e-5076.81Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP E F +RVQNHPAVVVP                   RE+ DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELTA
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T+
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELTA

A0A1S3B2R3 transcription initiation factor TFIID subunit 14b isoform X39.6e-5076.81Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP E F +RVQNHPAVVVP                   RE+ DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELTA
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T+
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELTA

A0A5A7SJ54 Transcription initiation factor TFIID subunit 14b isoform X39.6e-5076.81Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP E F +RVQNHPAVVVP                   RE+ DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELTA
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T+
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELTA

A0A6J1GH06 transcription initiation factor TFIID subunit 14b-like isoform X11.1e-5078.83Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP ENF ARVQN+PAVVVP                   RER DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT

A0A6J1IV07 transcription initiation factor TFIID subunit 14b-like isoform X12.5e-5078.83Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL
        LD+ HHLKLYPEDESGPQTTKKPVVVESYNEIVFPDP E F ARVQNHPAVVVP                   RER DTKDH L+QWFLNFSEADELLKL
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVP-------------------RERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT
        AAARQQVQAHIVKLRRQLSVMDGLPQFSKP AGYE T
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYELT

SwissProt top hitse value%identityAlignment
F4IPK2 Transcription initiation factor TFIID subunit 143.1e-2949.64Show/hide
Query:  LDVTHHLKLYPEDESG--PQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELL
        L+++H LKL PE+  G  P++ K PVV ESYNE+VFPDPFE+F ARV NHPA+ +                     E+ DTK+H L+ WFL FSE +EL 
Subjt:  LDVTHHLKLYPEDESG--PQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELL

Query:  KLAAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYE
        KL AARQ+VQA I KL+RQL ++DG P+  +  +GYE
Subjt:  KLAAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYE

Q9FH40 Transcription initiation factor TFIID subunit 14b2.1e-3863.57Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELLKL
        L + HHLKLYPEDESGP T KKPVVVESY+EIVFPDP E+F ARVQNHPA+  PR                   +R DTKDH L QWF++FSEADELL+L
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSK
        AAARQQVQAHI KLRRQ+S+++G  Q  K
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSK

Arabidopsis top hitse value%identityAlignment
AT2G18000.1 TBP-associated factor 143.2e-1360Show/hide
Query:  LDVTHHLKLYPEDESG--PQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVV
        L+++H LKL PE+  G  P++ K PVV ESYNE+VFPDPFE+F ARV NHPA+ +
Subjt:  LDVTHHLKLYPEDESG--PQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVV

AT2G18000.2 TBP-associated factor 142.2e-3049.64Show/hide
Query:  LDVTHHLKLYPEDESG--PQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELL
        L+++H LKL PE+  G  P++ K PVV ESYNE+VFPDPFE+F ARV NHPA+ +                     E+ DTK+H L+ WFL FSE +EL 
Subjt:  LDVTHHLKLYPEDESG--PQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELL

Query:  KLAAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYE
        KL AARQ+VQA I KL+RQL ++DG P+  +  +GYE
Subjt:  KLAAARQQVQAHIVKLRRQLSVMDGLPQFSKPIAGYE

AT5G45600.1 YEATS family protein1.5e-3963.57Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELLKL
        L + HHLKLYPEDESGP T KKPVVVESY+EIVFPDP E+F ARVQNHPA+  PR                   +R DTKDH L QWF++FSEADELL+L
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSK
        AAARQQVQAHI KLRRQ+S+++G  Q  K
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSK

AT5G45600.2 YEATS family protein1.5e-3963.57Show/hide
Query:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELLKL
        L + HHLKLYPEDESGP T KKPVVVESY+EIVFPDP E+F ARVQNHPA+  PR                   +R DTKDH L QWF++FSEADELL+L
Subjt:  LDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPR-------------------ERCDTKDHHLNQWFLNFSEADELLKL

Query:  AAARQQVQAHIVKLRRQLSVMDGLPQFSK
        AAARQQVQAHI KLRRQ+S+++G  Q  K
Subjt:  AAARQQVQAHIVKLRRQLSVMDGLPQFSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGTTACACACCATTTGAAGTTGTACCCTGAAGACGAATCTGGTCCACAAACAACAAAGAAACCTGTTGT
TGTGGAGTCTTACAACGAAATTGTGTTTCCTGATCCCTTTGAAAACTTTTGTGCTCGTGTTCAAAACCATCCAGCTGTTGTTGTGCCTCGGGAGAGATGTGACACCAAGG
ATCATCACCTTAATCAATGGTTCCTTAATTTCTCAGAGGCAGACGAGCTGCTAAAACTTGCAGCTGCTCGCCAACAAGTGCAAGCTCATATTGTCAAATTGAGAAGACAA
CTCAGTGTGATGGATGGACTACCTCAGTTTTCTAAACCAATTGCGGGTTATGAATTAACTGCTGCTAATGGAGTTCATCCATGA
mRNA sequenceShow/hide mRNA sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGTTACACACCATTTGAAGTTGTACCCTGAAGACGAATCTGGTCCACAAACAACAAAGAAACCTGTTGT
TGTGGAGTCTTACAACGAAATTGTGTTTCCTGATCCCTTTGAAAACTTTTGTGCTCGTGTTCAAAACCATCCAGCTGTTGTTGTGCCTCGGGAGAGATGTGACACCAAGG
ATCATCACCTTAATCAATGGTTCCTTAATTTCTCAGAGGCAGACGAGCTGCTAAAACTTGCAGCTGCTCGCCAACAAGTGCAAGCTCATATTGTCAAATTGAGAAGACAA
CTCAGTGTGATGGATGGACTACCTCAGTTTTCTAAACCAATTGCGGGTTATGAATTAACTGCTGCTAATGGAGTTCATCCATGA
Protein sequenceShow/hide protein sequence
FFFFFFFFFFFFLDVTHHLKLYPEDESGPQTTKKPVVVESYNEIVFPDPFENFCARVQNHPAVVVPRERCDTKDHHLNQWFLNFSEADELLKLAAARQQVQAHIVKLRRQ
LSVMDGLPQFSKPIAGYELTAANGVHP