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CmoCh07G004880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G004880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAP complex subunit sigma
Genome locationCmo_Chr07:2219073..2219992
RNA-Seq ExpressionCmoCh07G004880
SyntenyCmoCh07G004880
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594830.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia]3.7e-2194.83Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAESHLRS
        MIR VIVMNTQGKPRFAKFYDFQ V KQLELIRSIYGVLCSRAENVSNFVEAESHLRS
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAESHLRS

KAG7026793.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-2193.1Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAESHLRS
        MIR VIVMNTQGKPRFAKFYDFQ V KQLELIRSIYGVLCSRAENVSNF+EAESHLRS
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAESHLRS

XP_022978569.1 AP-3 complex subunit sigma-like [Cucurbita maxima]8.5e-1890.74Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIRAVIVMNTQGKPRFAKFYDFQ V KQ ELIRS++GVLCSRAENVSNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

XP_023003840.1 AP-3 complex subunit sigma-like [Cucurbita maxima]5.9e-1992.59Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIRAVIVMNTQGKPRFAKFYDFQ + KQLELIRS+YGVLCSRAENVSNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

XP_038893159.1 AP-3 complex subunit sigma [Benincasa hispida]8.5e-1890.74Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIRAVIVMNTQGKPRFAKFY+FQ V KQ ELIRS+YGVLCSRAENVSNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

TrEMBL top hitse value%identityAlignment
A0A1S3BT37 AP complex subunit sigma9.1e-1885.19Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIR+VIVMNT+GKPRFAKFYDFQ + KQ ELIRS+YGVLCSRAEN+SNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

A0A5A7UR76 AP-3 complex subunit sigma9.1e-1885.19Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIR+VIVMNT+GKPRFAKFYDFQ + KQ ELIRS+YGVLCSRAEN+SNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

A0A6J1GFL2 AP complex subunit sigma9.1e-1888.89Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIRAVIVMNTQGKPRFAKFYDFQ V KQ ELIRS++GVLCSRAEN+SNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

A0A6J1IUE1 AP complex subunit sigma4.1e-1890.74Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIRAVIVMNTQGKPRFAKFYDFQ V KQ ELIRS++GVLCSRAENVSNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

A0A6J1KSX1 AP-3 complex subunit sigma-like2.8e-1992.59Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MIRAVIVMNTQGKPRFAKFYDFQ + KQLELIRS+YGVLCSRAENVSNFVEAES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

SwissProt top hitse value%identityAlignment
Q2YDH6 AP-3 complex subunit sigma-11.3e-0541.18Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE
        MI+A+++ N  GKPR +KFY   +   Q ++IR  + ++  R ENV NF+E
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE

Q553S2 AP-3 complex subunit sigma2.9e-0537.25Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE
        MI++++++N  GKPR  KFY+  +  KQ ++IR ++ ++  R E   NF+E
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE

Q8VZ37 AP-3 complex subunit sigma3.1e-1570.37Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MI+AV++MNTQGKPR AKFYD+  V KQ ELIR ++ VLCSR ENVSNF+E ES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES

Q92572 AP-3 complex subunit sigma-11.3e-0541.18Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE
        MI+A+++ N  GKPR +KFY   +   Q ++IR  + ++  R ENV NF+E
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE

Q9DCR2 AP-3 complex subunit sigma-11.3e-0541.18Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE
        MI+A+++ N  GKPR +KFY   +   Q ++IR  + ++  R ENV NF+E
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE

Arabidopsis top hitse value%identityAlignment
AT2G17380.1 associated protein 197.4e-0435.29Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE
        MI  V++++ QGK R  K+Y   T  ++ ++IR + GV+ +R   + NF+E
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVE

AT3G50860.1 Clathrin adaptor complex small chain family protein2.2e-1670.37Show/hide
Query:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES
        MI+AV++MNTQGKPR AKFYD+  V KQ ELIR ++ VLCSR ENVSNF+E ES
Subjt:  MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACGGGCGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGACCGTCGGGAAGCAGCTGGAGCTCATTCGTAGCATCTATGG
AGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAAGCTGAGTCCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCCACCCTTTATTTTGTG
CTTGTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATACGGGCGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGACCGTCGGGAAGCAGCTGGAGCTCATTCGTAGCATCTATGG
AGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCGTGGAAGCTGAGTCCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCCACCCTTTATTTTGTG
CTTGTCTTTAACAGTTCTGAGAACGAGCTCGCCATGCTTGACCTGATACAAGGTATTTCCGATATCTATATCATGGATTACTGATCTCTGGATCAACTTTATTGTTAATA
TTATTTACATGCTTAGACGATATCTATGAAGACATTAAACGGGATGGTATCATGTTAATGTTTAGACATTCTTTAGTTCATAATTATTATAAGAAGCGGGGAGAGGCAAT
CAATACAAAGAATGATGAAGCGTAGGCTTAAAACTCTCTTTTTTTCATGGATGGATCAGTAATGATCAGTTATGTATCAATTTTTATTTATTTAGGTAAGGTA
Protein sequenceShow/hide protein sequence
MIRAVIVMNTQGKPRFAKFYDFQTVGKQLELIRSIYGVLCSRAENVSNFVEAESHLRSGLSSCIQTLRHPLFCACL