CuGenDBv2

Gene ID	CmoCh07G005770
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	MADS-box protein SVP-like
Genome location	Cmo_Chr07:2614037..2614845
RNA-Seq Expression	CmoCh07G005770
Synteny	CmoCh07G005770
Gene Ontology terms	GO:0009266 - response to temperature stimulus (biological process) GO:0009910 - negative regulation of flower development (biological process) GO:0017148 - negative regulation of translation (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0000900 - translation repressor activity, mRNA regulatory element binding (molecular function) GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6594905.1 O-fucosyltransferase 31, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-29

97.3

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

KAG7026868.1 MADS-box protein JOINTLESS, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.5e-26

97.06

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKL
        ++SAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKL
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKL

XP_022962900.1 MADS-box protein JOINTLESS-like [Cucurbita moschata]

2.1e-29

97.3

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

XP_023003989.1 MADS-box protein JOINTLESS-like [Cucurbita maxima]

1.8e-28

94.59

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAELVEENKRLKKQAEKMDGVR+FGVEPEI+VVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

XP_023517620.1 MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo]

4.8e-29

95.95

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAELVEENKRLKKQAEKMDGVRNFGVEPEIL+VEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR9 K-box domain-containing protein

1.3e-24

83.78

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAEL++ENKRLK+QAEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+NSNGP QDLESSDTSLKLGL YSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

A0A1S3B1C2 MADS-box protein SVP-like

2.9e-24

82.43

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAEL++ENKRLK+QAEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+NSNGP QDLESSDTSLKLGL Y+G
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

A0A5D3CLB3 MADS-box protein SVP-like

2.9e-24

82.43

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAEL++ENKRLK+QAEKM+GVR+ GVEPEILVVEDGQSSNSVTE CV+NSNGP QDLESSDTSLKLGL Y+G
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

A0A6J1HEK8 MADS-box protein JOINTLESS-like

1.0e-29

97.3

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

A0A6J1KUX0 MADS-box protein JOINTLESS-like

8.8e-29

94.59

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        ++SAELVEENKRLKKQAEKMDGVR+FGVEPEI+VVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

SwissProt top hits

e value

%identity

Alignment

Q9FUY6 MADS-box protein JOINTLESS

5.5e-04

43.02

Show/hide

Query:  KQSAELVEENKRLKKQAEKM--------DGVRNFGV---EPEILV----VEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLA
        ++   L+EEN++L++Q  ++        +G R  GV   EPE        EDGQSS SVT  C  + + P QD +SSDTSLKLGLA
Subjt:  KQSAELVEENKRLKKQAEKM--------DGVRNFGV---EPEILV----VEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLA

Q9FVC1 MADS-box protein SVP

3.8e-05

44.59

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        +Q  +L EEN+RL  Q                 V E+GQSS S+T A   NS G   D ESSDTSL+LGL Y G
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

Arabidopsis top hits

e value

%identity

Alignment

AT2G22540.1 K-box region and MADS-box transcription factor family protein

2.7e-06

44.59

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        +Q  +L EEN+RL  Q                 V E+GQSS S+T A   NS G   D ESSDTSL+LGL Y G
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

AT2G22540.2 K-box region and MADS-box transcription factor family protein

2.7e-06

44.59

Show/hide

Query:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG
        +Q  +L EEN+RL  Q                 V E+GQSS S+T A   NS G   D ESSDTSL+LGL Y G
Subjt:  KQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGTGCAAGCAGTCGGCCGAGCTGGTGGAAGAGAATAAGCGACTGAAAAAACAAGCGGAGAAAATGGATGGTGTGAGGAACTTCGGCGTAGAGCCCGAGATTTTGGTAGT
GGAAGATGGCCAGTCCTCGAACTCAGTCACTGAAGCTTGTGTCACCAACTCCAATGGCCCGGCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAGCTAGGGCTGGCAT
ATTCCGGGTAATGGTGATAGAACAGGAAGATGAACAGTCACTGTAGCTAGCAAAAGGCAGTTTATAAACATAATTATATACCCTAAATTTTGGGTTAGTTGAGTAATATA
ACCCATCTAAATCTTAATCAACCAATTCATGAGGTTGCATTTTCCAGAATTCAATGTGCACCGTTTAGCGAATCAAGTTAGTGAGCAACTGAGCTTGATGAAGCCTTGGT
GTGTAGGTGAACCACTTGTAATTTTCTGGGGGTAAGGATTTAATGGATGCTTGTAACGATTGAGTGTTGCTGGTGACATGTTGCCCTTGTTTTGTAAAGCAGACTCGTAA
TTTTAGTTTGAATCAATGATAGTTGTTTGTACTCTTGAACAGCTTAGTGCGATAATATTGCTTTCCCCATT

Protein sequence

Show/hide protein sequence

MCKQSAELVEENKRLKKQAEKMDGVRNFGVEPEILVVEDGQSSNSVTEACVTNSNGPAQDLESSDTSLKLGLAYSG

CmoCh07G005770 (gene) of Cucurbita moschata (Rifu) v1 genome