CuGenDBv2

Gene ID	CmoCh07G006340
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	Cmo_Chr07:2863381..2865362
RNA-Seq Expression	CmoCh07G006340
Synteny	CmoCh07G006340
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6594952.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-47

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Query:  MLSSDIYWILPSQEEFPPQFFSASSFHGVIEHEGFGHRLETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSRILSAHEN
        MLSSDIYWILPSQEEFPPQFFSASSFHGV EHE FGHRLETTPHDSTNDRDADFEKVYWIL KFHARVQKLEHALQDSGVVLRSCL EQVLSRILSAHEN
Subjt:  MLSSDIYWILPSQEEFPPQFFSASSFHGVIEHEGFGHRLETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSRILSAHEN

KAG6604102.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-13

68.49

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Query:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        +G  E  GFG   L+TTPHDSTNDRD     AD EKVY IL KFH RV KLE ALQ+SGVVLRS LPE+VLSR
Subjt:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

KAG7034267.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-13

68.49

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Query:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        +G  E  GFG   L+TTPHDSTNDRD     AD EKVY IL KFH RV KLE ALQ+SGVVLRS LPE+VLSR
Subjt:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

XP_023544375.1 putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita pepo subsp. pepo]

2.2e-13

68.49

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Query:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        +G  E  GFG   L+TTPHDSTNDRD     AD EKVY IL KFH RV KLE ALQ+SGVVLRS LPE+VLSR
Subjt:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

XP_038877798.1 pentatricopeptide repeat-containing protein At3g49730-like [Benincasa hispida]

2.2e-13

62.82

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Query:  SASSFHGVIEHEGFGH-RLETTPHDSTNDRDA-----DFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        S +S +G  +H GFG   L+TTPH+ST DRDA     D EKVY IL KFH RV KLE ALQ+SGV+LRS LPE+VLSR
Subjt:  SASSFHGVIEHEGFGH-RLETTPHDSTNDRDA-----DFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPG0 Uncharacterized protein

4.4e-12

58.97

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Query:  SASSFHGVIEHEGFGH-RLETTPHDSTNDRDA-----DFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        S +S +G  +  GFG   L+TTPH+S +DRDA     D EKVY IL KFH RV KLE ALQ+SGV++RS LPE+VLSR
Subjt:  SASSFHGVIEHEGFGH-RLETTPHDSTNDRDA-----DFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

A0A5A7VI13 Pentatricopeptide repeat-containing protein

8.4e-11

58.97

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Query:  SASSFHGVIEHEGFGH-RLETTPHDSTNDRDA-----DFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        S +S +G  +   FG   L+TTPH+ST+D DA     D EKVY IL KFH RV KLE ALQ+SGV+LRS LPE+VLSR
Subjt:  SASSFHGVIEHEGFGH-RLETTPHDSTNDRDA-----DFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

A0A6J1DET4 putative pentatricopeptide repeat-containing protein At5g65820

8.4e-11

60.27

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Query:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        +G +E  GFG   + T PHDST+D+D     AD EKVY IL KFH RV KLE ALQ+SGV+LRS LPE+VL+R
Subjt:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

A0A6J1GEW3 putative pentatricopeptide repeat-containing protein At5g65820

2.4e-13

67.12

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Query:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        +G  E  GFG   L+TTPHDSTNDRD     AD EK+Y IL KFH RV KLE ALQ+SGVVLRS LPE+VLSR
Subjt:  HGVIEHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

A0A6J1IJP9 putative pentatricopeptide repeat-containing protein At5g65820

6.9e-13

71.01

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Query:  EHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        E  GFG   L+TTPHDSTNDRD     AD EKVY IL KFH RV KLE ALQ+SGVVLRS LPE+VLSR
Subjt:  EHEGFGH-RLETTPHDSTNDRD-----ADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

SwissProt top hits

e value

%identity

Alignment

Q9FH87 Putative pentatricopeptide repeat-containing protein At5g65820

6.6e-05

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Query:  ETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        + T +   ++  +D EK Y IL KFH+RV KLE AL +SGV LR  L E+VL+R
Subjt:  ETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

Arabidopsis top hits

e value

%identity

Alignment

AT3G49730.1 Tetratricopeptide repeat (TPR)-like superfamily protein

7.5e-04

45.1

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Query:  PHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        P    ++   + EK+Y IL   H+RV KLE AL +SG+ LR  L  +VLSR
Subjt:  PHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

AT5G65820.1 Pentatricopeptide repeat (PPR) superfamily protein

4.7e-06

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Query:  ETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR
        + T +   ++  +D EK Y IL KFH+RV KLE AL +SGV LR  L E+VL+R
Subjt:  ETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSR

Sequences

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CDS sequence

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ATGCTTAGCAGTGACATATATTGGATTCTTCCTTCTCAAGAAGAATTTCCTCCCCAATTCTTTTCAGCTTCAAGTTTTCATGGGGTAATTGAGCATGAAGGGTTTGGGCA
TCGCCTGGAAACAACTCCCCATGATTCCACCAATGATAGAGATGCCGACTTCGAAAAGGTGTATTGGATTCTAGGGAAGTTCCATGCCAGAGTTCAGAAACTCGAGCATG
CTCTGCAGGACTCTGGTGTTGTTTTACGCTCCTGTCTACCGGAACAAGTTCTGAGCAGGATTCTTAGCGCACATGAAAACTATAGAACCTCTTGCAGCTTCACTGGGAAA
CTGGAAACTGATATTTTACATCTATCCCCGGAACGGATGGAGGAGAGTGGAAGAATGAAAGTTGGTGTCTGGATCAAACCTGTCGAGATTAGCATTAACATCGATCGCAA
AAGTTTCAGAAAGGGGAGTCATGACGTCTCTTGCGACCTTCTCGGTGAGTTCCAGTGCTCCTCCAATTATGCTCTCCTCCTTTTCCAGCCTGCACTTCTAAGAAACCGAA
CTCAGCGACACAAGATAGGCAGAGAGTTGCTCGTGTTTGAGACAAGGTACCTCATTGCCATGAAAATCTACAAGTGTTTTCAGTTCTGCTCTACGGAACAGAGCTTTATG
TTCTTTACCCAGTGA

mRNA sequence

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Protein sequence

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MLSSDIYWILPSQEEFPPQFFSASSFHGVIEHEGFGHRLETTPHDSTNDRDADFEKVYWILGKFHARVQKLEHALQDSGVVLRSCLPEQVLSRILSAHENYRTSCSFTGK
LETDILHLSPERMEESGRMKVGVWIKPVEISINIDRKSFRKGSHDVSCDLLGEFQCSSNYALLLFQPALLRNRTQRHKIGRELLVFETRYLIAMKIYKCFQFCSTEQSFM
FFTQ

CmoCh07G006340 (gene) of Cucurbita moschata (Rifu) v1 genome