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CmoCh07G007070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G007070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionU1 small nuclear ribonucleoprotein A isoform X1
Genome locationCmo_Chr07:3180793..3185758
RNA-Seq ExpressionCmoCh07G007070
SyntenyCmoCh07G007070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3474166.1 protein enabled-like protein isoform X1 [Gossypium australe]7.2e-1236.42Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYS-------------RTSSLPFEADYVLCLYNLF---------------W---SKRGHIIL------K
        PREIYN+FREFPGYESSHLR P   ++     ++               + + F+ +    L+  F               W   +K+   +        
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYS-------------RTSSLPFEADYVLCLYNLF---------------W---SKRGHIIL------K

Query:  AHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTRRSSALLSTSILLKW
        AH  HVLH W  AG GS H+SGM NSAY+  GYP  +RSSALL   I + W
Subjt:  AHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTRRSSALLSTSILLKW

KAE9449685.1 hypothetical protein C3L33_18415, partial [Rhododendron williamsianum]3.9e-1036.11Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRR-----------RSHLHLLYSRTSSLPFEAD-----YVLCLYNLFWSKRGHI------------------------
        PREIYNLF EFPGYESSHLR P              +          + + F+ +     YV    +   SKR  I                        
Subjt:  PREIYNLFREFPGYESSHLRVPRRR-----------RSHLHLLYSRTSSLPFEAD-----YVLCLYNLFWSKRGHI------------------------

Query:  ----ILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTR
             + +H  HVLH WA AG+GS HM G+ NSAYNT GYPST+
Subjt:  ----ILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTR

KAG5528633.1 hypothetical protein RHGRI_029347 [Rhododendron griersonianum]1.2e-1143.8Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGH---------------------IILKAHFTHVLHGWARAGLG
        PREIYNLF EFPGYESSHLR        +     + S+L     YV    +   SKR                       I   AH  HVLH WA AG+G
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGH---------------------IILKAHFTHVLHGWARAGLG

Query:  STHMSGMSNSAYNTFGYPSTR
        S HM G+ NSAYNT GYPST+
Subjt:  STHMSGMSNSAYNTFGYPSTR

TQD77052.1 hypothetical protein C1H46_037411 [Malus baccata]7.2e-1236.18Show/hide
Query:  PREIYNLFREFPGYESSHLRVPR-------------------------------RRRSHLHLLYSRTSSLPFEA-----------------------DYV
        PREIYNLFREFPGYESSHLR P                                 + S L++  ++++S    +                       D V
Subjt:  PREIYNLFREFPGYESSHLRVPR-------------------------------RRRSHLHLLYSRTSSLPFEA-----------------------DYV

Query:  LCLYNLFWSKRGHIILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPS
        + + N   S  GHI L AH  HVLH W  AG+GS H+ GM NSAYN  GYPS
Subjt:  LCLYNLFWSKRGHIILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPS

XP_029148720.1 uncharacterized protein LOC112748531 [Arachis hypogaea]2.9e-1341.25Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRS---------------HLHLLYSRTSSLPFEAD-YVLCLYNLFWSKR-----------------GHIILKAHFT
        PREIYNLFREFPGYESSHLR P                     +H L      L  E+  Y+    +   +KR                 G + + AHF 
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRS---------------HLHLLYSRTSSLPFEAD-YVLCLYNLFWSKR-----------------GHIILKAHFT

Query:  HVLHGWARAGLGSTHMSGMSNSAY--NTFGYPSTRRSSALLSTSIL----LKWITTSLFE
        HVLH  A AG+ S HM GM NSA+  NT GYPS +RSSALL+ S +    L W T SL E
Subjt:  HVLHGWARAGLGSTHMSGMSNSAY--NTFGYPSTRRSSALLSTSIL----LKWITTSLFE

TrEMBL top hitse value%identityAlignment
A0A4Y1RQ38 RNA-binding family protein with RRM/RBD/RNP motifs1.2e-0939.23Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRR------------RSHLHLLYSRTSSLPFEADYVLCLY------------NLFWSKRGHIILKAHFTHVLHGWARA
        PREIYNLFREFPGYESSHLR P  +            +S +  +++  + + F+ +    LY            +    +R     KA  +    G   +
Subjt:  PREIYNLFREFPGYESSHLRVPRRR------------RSHLHLLYSRTSSLPFEADYVLCLY------------NLFWSKRGHIILKAHFTHVLHGWARA

Query:  GLGSTHMSGMSNSAYNTFGYPSTRRSSALL
        G+GS HM GM NSAYN  GYPS  RSSALL
Subjt:  GLGSTHMSGMSNSAYNTFGYPSTRRSSALL

A0A540KSR1 Uncharacterized protein3.5e-1236.18Show/hide
Query:  PREIYNLFREFPGYESSHLRVPR-------------------------------RRRSHLHLLYSRTSSLPFEA-----------------------DYV
        PREIYNLFREFPGYESSHLR P                                 + S L++  ++++S    +                       D V
Subjt:  PREIYNLFREFPGYESSHLRVPR-------------------------------RRRSHLHLLYSRTSSLPFEA-----------------------DYV

Query:  LCLYNLFWSKRGHIILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPS
        + + N   S  GHI L AH  HVLH W  AG+GS H+ GM NSAYN  GYPS
Subjt:  LCLYNLFWSKRGHIILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPS

A0A5B6VYU9 Protein enabled-like protein isoform X13.5e-1236.42Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYS-------------RTSSLPFEADYVLCLYNLF---------------W---SKRGHIIL------K
        PREIYN+FREFPGYESSHLR P   ++     ++               + + F+ +    L+  F               W   +K+   +        
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYS-------------RTSSLPFEADYVLCLYNLF---------------W---SKRGHIIL------K

Query:  AHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTRRSSALLSTSILLKW
        AH  HVLH W  AG GS H+SGM NSAY+  GYP  +RSSALL   I + W
Subjt:  AHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTRRSSALLSTSILLKW

A0A5E4EQB4 PREDICTED: U2 small nuclear ribonucleo2.8e-0937.27Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRR------------RSHLHLLYSRTSSLPFEADYVLCLY------------NLFWSKRGHIILKAHFTHVLHGWA-R
        PREIYNLFREFPGYESSHLR P  +            +S +  +++  + + F+ +    LY            +    +R     KA  +    G    
Subjt:  PREIYNLFREFPGYESSHLRVPRRR------------RSHLHLLYSRTSSLPFEADYVLCLY------------NLFWSKRGHIILKAHFTHVLHGWA-R

Query:  AGLGSTHMSGMSNSAYNTFGYPSTRRSSALL------------------STSILLKWITTS
        AG+GS HM GM NSAYN  GYPS  RSSALL                  ST  +LK+ITTS
Subjt:  AGLGSTHMSGMSNSAYNTFGYPSTRRSSALL------------------STSILLKWITTS

A0A6A4KVP5 Uncharacterized protein (Fragment)1.9e-1036.11Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRR-----------RSHLHLLYSRTSSLPFEAD-----YVLCLYNLFWSKRGHI------------------------
        PREIYNLF EFPGYESSHLR P              +          + + F+ +     YV    +   SKR  I                        
Subjt:  PREIYNLFREFPGYESSHLRVPRRR-----------RSHLHLLYSRTSSLPFEAD-----YVLCLYNLFWSKRGHI------------------------

Query:  ----ILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTR
             + +H  HVLH WA AG+GS HM G+ NSAYNT GYPST+
Subjt:  ----ILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0734.19Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIIL---------KAHFTHVLHGW------------ARAGLG
        PREIYNLFREFPGYE+SHLR     +     ++   S L      +  L  + +    H  L         K+  +    GW              +G G
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIIL---------KAHFTHVLHGW------------ARAGLG

Query:  STHMSGMSNSAYNTFGY
        S    GMS+SAYNT GY
Subjt:  STHMSGMSNSAYNTFGY

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0734.19Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIIL---------KAHFTHVLHGW------------ARAGLG
        PREIYNLFREFPGYE+SHLR     +     ++   S L      +  L  + +    H  L         K+  +    GW              +G G
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIIL---------KAHFTHVLHGW------------ARAGLG

Query:  STHMSGMSNSAYNTFGY
        S    GMS+SAYNT GY
Subjt:  STHMSGMSNSAYNTFGY

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-0734.19Show/hide
Query:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIIL---------KAHFTHVLHGW------------ARAGLG
        PREIYNLFREFPGYE+SHLR     +     ++   S L      +  L  + +    H  L         K+  +    GW              +G G
Subjt:  PREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIIL---------KAHFTHVLHGW------------ARAGLG

Query:  STHMSGMSNSAYNTFGY
        S    GMS+SAYNT GY
Subjt:  STHMSGMSNSAYNTFGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGCCCCCGAGAAATTTACAATCTCTTCCGTGAATTTCCGGGATACGAGTCCTCTCATCTACGAGTCCCTCGCAGACGACGCAGCCACTTGCATTTGCTGTATTC
TCGGACCAGCAGTCTGCCATTTGAGGCTGATTATGTGCTCTGCTTGTATAACCTCTTTTGGAGTAAGAGAGGACACATTATTCTTAAAGCTCACTTCACACATGTTTTGC
ACGGTTGGGCACGAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACAACACCTTTGGTTATCCATCTACACGAAGGTCATCTGCACTACTTAGC
ACATCTATATTATTGAAATGGATAACTACAAGCTTATTTGAAGCTTATACATTGTTGTATAACAGTAATCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGCCCCCGAGAAATTTACAATCTCTTCCGTGAATTTCCGGGATACGAGTCCTCTCATCTACGAGTCCCTCGCAGACGACGCAGCCACTTGCATTTGCTGTATTC
TCGGACCAGCAGTCTGCCATTTGAGGCTGATTATGTGCTCTGCTTGTATAACCTCTTTTGGAGTAAGAGAGGACACATTATTCTTAAAGCTCACTTCACACATGTTTTGC
ACGGTTGGGCACGAGCAGGTCTTGGCAGCACTCACATGTCTGGAATGAGTAATTCTGCTTACAACACCTTTGGTTATCCATCTACACGAAGGTCATCTGCACTACTTAGC
ACATCTATATTATTGAAATGGATAACTACAAGCTTATTTGAAGCTTATACATTGTTGTATAACAGTAATCACTAG
Protein sequenceShow/hide protein sequence
MSSPREIYNLFREFPGYESSHLRVPRRRRSHLHLLYSRTSSLPFEADYVLCLYNLFWSKRGHIILKAHFTHVLHGWARAGLGSTHMSGMSNSAYNTFGYPSTRRSSALLS
TSILLKWITTSLFEAYTLLYNSNH