CuGenDBv2

Gene ID	CmoCh07G007080
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	U1 small nuclear ribonucleoprotein A isoform X2
Genome location	Cmo_Chr07:3185797..3186835
RNA-Seq Expression	CmoCh07G007080
Synteny	CmoCh07G007080
Gene Ontology terms	GO:0016020 - membrane (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022133116.1 protein WHI4 [Momordica charantia]

4.3e-28

57.04

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK+VNDTVAANV                             RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

XP_022977593.1 protein WHI4 isoform X1 [Cucurbita maxima]

5.7e-28

57.04

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV                             RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

XP_022977595.1 U1 small nuclear ribonucleoprotein A isoform X2 [Cucurbita maxima]

5.7e-28

57.04

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV                             RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

XP_038881693.1 protein WHI4 isoform X1 [Benincasa hispida]

7.4e-28

56.3

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV+                            RC GFLKLKMQSTYGAPVAFVDFQDT CSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

XP_038881694.1 protein WHI4 isoform X2 [Benincasa hispida]

7.4e-28

56.3

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV+                            RC GFLKLKMQSTYGAPVAFVDFQDT CSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLD8 Uncharacterized protein

8.0e-28

56.3

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV+                            RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKK K
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

A0A1S4DUH9 U1 small nuclear ribonucleoprotein A isoform X1

8.0e-28

56.3

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV+                            RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKK K
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

A0A6J1BU41 protein WHI4

2.1e-28

57.04

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK+VNDTVAANV                             RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

A0A6J1IMS7 U1 small nuclear ribonucleoprotein A isoform X2

2.7e-28

57.04

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV                             RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

A0A6J1IQG5 protein WHI4 isoform X1

2.7e-28

57.04

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Query:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        +HG FDNK VNDTVAANV                             RC GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQG+ILYSSPPGEGMRLE
Subjt:  THGCFDNKNVNDTVAANVV----------------------------RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

Query:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK
                              YAKS+MG+RKKLK
Subjt:  YPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKLK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.8e-17

51.72

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Query:  RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEYPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKL
        RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQGT+LYSS  GE +RL+                      YA+S+MG+RKK+
Subjt:  RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEYPSTSFTIFVMPPNVLLNPGFRYAKSQMGVRKKL

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein

7.4e-18

65.08

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Query:  RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEYPSTSFTIFV
        RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQGT+LYSS  GE +RL+YPS    +F+
Subjt:  RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEYPSTSFTIFV

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein

1.2e-15

69.81

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Query:  RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        RC GFLKLK+Q TYG PVAFVDFQD +CS+ AL+ LQGT+LYSS  GE +RL+
Subjt:  RCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.8e-06

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Query:  GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE
        GF  LK+++  G PVAF DF++   +T A+NHLQG +L SS  G GM +E
Subjt:  GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein

5.9e-07

50.98

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Query:  GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEY
        GF  LK+++  G PVAF DF++   +T A+NHLQG +L SS  G GM +EY
Subjt:  GFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEY

Sequences

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CDS sequence

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ATGCCCCCGACTCCTATTTTAGGTTTTCAACTTTTCTTTGCTTGCTTCATTGTGCTTCTTCTTCTAAGTTCTAACTCATTTGTACTTTCTATCATCACCCATGGATGCTT
TGATAACAAAAATGTGAATGATACGGTGGCTGCAAATGTGGTAAGATGCCTGGGGTTTTTAAAGCTGAAGATGCAGAGCACGTATGGGGCCCCAGTTGCTTTTGTTGATT
TTCAGGATACTGCCTGTTCAACTGGAGCATTGAACCATCTGCAAGGCACAATTCTGTACTCGTCACCTCCTGGGGAGGGCATGCGGTTGGAGTATCCTTCTACAAGCTTT
ACTATATTCGTCATGCCTCCAAATGTTTTGCTTAACCCAGGATTTAGGTACGCAAAATCCCAAATGGGCGTGCGCAAGAAATTGAAATGA

mRNA sequence

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Protein sequence

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MPPTPILGFQLFFACFIVLLLLSSNSFVLSIITHGCFDNKNVNDTVAANVVRCLGFLKLKMQSTYGAPVAFVDFQDTACSTGALNHLQGTILYSSPPGEGMRLEYPSTSF
TIFVMPPNVLLNPGFRYAKSQMGVRKKLK

CmoCh07G007080 (gene) of Cucurbita moschata (Rifu) v1 genome