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CmoCh07G007960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G007960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncrossover junction endonuclease EME1B isoform X1
Genome locationCmo_Chr07:3643144..3644315
RNA-Seq ExpressionCmoCh07G007960
SyntenyCmoCh07G007960
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595104.1 Crossover junction endonuclease EME1B, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5180.43Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPPRAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEYGH
        MSQPIVLSGEEDG S PYPIHSKKRRTGSDAFLSIFSTVI                  AAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKN+YGH
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPPRAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEYGH

Query:  CDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        CDWIDSDRDDVKNSVPTSKFDRAGSGSSLG  +L  +S
Subjt:  CDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

KAG7027119.1 Crossover junction endonuclease EME1B, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-4079.82Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPPRAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEYGH
        MSQPIVLSGEEDG S PYPIHSKKRRTGSDAFLSIFST                    AAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKN+YGH
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPPRAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEYGH

Query:  CDWIDSDRDDVKNS
        CDWIDSDRDDVKNS
Subjt:  CDWIDSDRDDVKNS

XP_022977602.1 crossover junction endonuclease EME1B isoform X1 [Cucurbita maxima]1.3e-3356.88Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+PIVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE DNESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

XP_022977603.1 crossover junction endonuclease EME1B isoform X2 [Cucurbita maxima]1.3e-3356.88Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+PIVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE DNESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

XP_022977604.1 crossover junction endonuclease EME1B isoform X3 [Cucurbita maxima]1.3e-3356.88Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+PIVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE DNESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

TrEMBL top hitse value%identityAlignment
A0A6J1GF29 crossover junction endonuclease EME1B-like isoform X11.0e-3155Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+ IVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE  +ESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

A0A6J1GG33 crossover junction endonuclease EME1B-like isoform X21.0e-3155Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+ IVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE  +ESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

A0A6J1IIZ2 crossover junction endonuclease EME1B isoform X16.5e-3456.88Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+PIVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE DNESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

A0A6J1IQH9 crossover junction endonuclease EME1B isoform X26.5e-3456.88Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+PIVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE DNESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

A0A6J1IRV2 crossover junction endonuclease EME1B isoform X36.5e-3456.88Show/hide
Query:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS
        MS+PIVLS EED YS P PI SKKRRT S AF SI STV+VLDDDP+  KSG NS            PP          +   D  A+DLN+D KFAGIS
Subjt:  MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNS------------PP----------RAAFDFLAKDLNTDQKFAGIS

Query:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS
        GLICLE DNESESDS K   G  +WI SD DD+KN   TSKFD AGSG S+G   L  +S
Subjt:  GLICLEFDNESESDSQKNEYGHCDWIDSDRDDVKNSVPTSKFDRAGSGSSLGRFMLSLVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAGCCGATTGTCCTCTCCGGCGAGGAGGACGGGTACTCTGCACCCTACCCGATCCACTCCAAGAAACGTCGAACTGGATCGGATGCATTTCTGAGTATATTCTC
CACTGTTATTGTGCTTGATGATGATCCGAGTACTCATAAATCAGGTCGTAACTCTCCGCCTCGAGCGGCATTTGACTTTCTTGCTAAGGATTTGAATACGGACCAGAAGT
TCGCTGGAATCAGTGGATTGATATGCTTAGAGTTCGATAACGAGTCTGAAAGTGATTCTCAGAAGAATGAGTATGGGCACTGTGATTGGATTGATTCTGATCGTGATGAT
GTGAAAAACTCAGTACCGACTTCTAAATTTGACAGGGCAGGATCGGGTTCTTCTCTTGGTAGGTTCATGTTATCCTTGGTTTCCTTTCCTATTTTTGTCAGTTCCTGCAT
TTCTTACTGCGTGGAGCAAACAGAATTTTCTCATCTCTCATCATTTGCGCAGGCGCTTGCATATTTGAAGTCATTTCTTAGCCCGCCTTCCATTAATATTTACTGCAATA
CTACTGTAATGAAAAGTTTGTGCTGCACAGCTAATACAGTGCAGTATAAGATTACACGCCCTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAGCCGATTGTCCTCTCCGGCGAGGAGGACGGGTACTCTGCACCCTACCCGATCCACTCCAAGAAACGTCGAACTGGATCGGATGCATTTCTGAGTATATTCTC
CACTGTTATTGTGCTTGATGATGATCCGAGTACTCATAAATCAGGTCGTAACTCTCCGCCTCGAGCGGCATTTGACTTTCTTGCTAAGGATTTGAATACGGACCAGAAGT
TCGCTGGAATCAGTGGATTGATATGCTTAGAGTTCGATAACGAGTCTGAAAGTGATTCTCAGAAGAATGAGTATGGGCACTGTGATTGGATTGATTCTGATCGTGATGAT
GTGAAAAACTCAGTACCGACTTCTAAATTTGACAGGGCAGGATCGGGTTCTTCTCTTGGTAGGTTCATGTTATCCTTGGTTTCCTTTCCTATTTTTGTCAGTTCCTGCAT
TTCTTACTGCGTGGAGCAAACAGAATTTTCTCATCTCTCATCATTTGCGCAGGCGCTTGCATATTTGAAGTCATTTCTTAGCCCGCCTTCCATTAATATTTACTGCAATA
CTACTGTAATGAAAAGTTTGTGCTGCACAGCTAATACAGTGCAGTATAAGATTACACGCCCTATGTAA
Protein sequenceShow/hide protein sequence
MSQPIVLSGEEDGYSAPYPIHSKKRRTGSDAFLSIFSTVIVLDDDPSTHKSGRNSPPRAAFDFLAKDLNTDQKFAGISGLICLEFDNESESDSQKNEYGHCDWIDSDRDD
VKNSVPTSKFDRAGSGSSLGRFMLSLVSFPIFVSSCISYCVEQTEFSHLSSFAQALAYLKSFLSPPSINIYCNTTVMKSLCCTANTVQYKITRPM