CuGenDBv2

Gene ID	CmoCh07G008230
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	AAA domain-containing protein
Genome location	Cmo_Chr07:3837875..3839339
RNA-Seq Expression	CmoCh07G008230
Synteny	CmoCh07G008230
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016020 - membrane (cellular component) GO:0004176 - ATP-dependent peptidase activity (molecular function) GO:0004222 - metalloendopeptidase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6604283.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.4e-27

85.71

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Query:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        TK RSR+RI TF KF  HRVFT KASSSDTDAV+ASTNVEEDVESAQLFEKLKD ERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

KAG7034444.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-26

84.52

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Query:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        TK RSR+RI TF KF  HRVFT KASSSDTDAV+ASTNVEEDVESAQLFEKLKD ER+R+NKL+ELQRK NLQLERQLVMASSW
Subjt:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

XP_022950306.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Cucurbita moschata]

5.4e-27

85.71

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Query:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        TK RSR+RI TF KF  HRVFT KASSSDTDAV+ASTNVEEDVESAQLFEKLKD ERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

XP_022977393.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Cucurbita maxima]

5.4e-27

85.71

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Query:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        TK RSR+RI TF KF  HRVFT KASSSDTDAV+ASTNVEEDVESAQLFEKLKD ERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

XP_038881869.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Benincasa hispida]

5.9e-26

83.53

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Query:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        ATK RSR+R  TF KF  HRVFT KAS+SDTD VVAS NVEEDVESAQLFEKLKDAERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DTH8 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic isoform X2

3.8e-26

83.53

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Query:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        ATK RSR+R  TF KF  HRVFT KASSSDTDAVVAS NVEED ESAQLFEKLKDAERQR+NKL+ELQRK NLQLERQLV+ASSW
Subjt:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

A0A1S4DU96 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic isoform X1

3.8e-26

83.53

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Query:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        ATK RSR+R  TF KF  HRVFT KASSSDTDAVVAS NVEED ESAQLFEKLKDAERQR+NKL+ELQRK NLQLERQLV+ASSW
Subjt:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

A0A6J1BUB8 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic

2.1e-24

81.18

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Query:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        A K R+RNRI +FQK    RV T++ASSSDTDAVVASTNVEEDVESAQLFEKLK AERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  ATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

A0A6J1GEJ5 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic

2.6e-27

85.71

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Query:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        TK RSR+RI TF KF  HRVFT KASSSDTDAV+ASTNVEEDVESAQLFEKLKD ERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

A0A6J1IPV0 probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic

2.6e-27

85.71

Show/hide

Query:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        TK RSR+RI TF KF  HRVFT KASSSDTDAV+ASTNVEEDVESAQLFEKLKD ERQR+NKL+ELQRK NLQLERQLVMASSW
Subjt:  TKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

SwissProt top hits

e value

%identity

Alignment

F4KF14 Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic

3.1e-09

54.24

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Query:  SSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        S+S  ++  +S + EED ES +LFEKL++ ER+R++ ++EL+RK N+QLERQLVMAS W
Subjt:  SSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

Arabidopsis top hits

e value

%identity

Alignment

AT5G64580.1 AAA-type ATPase family protein

2.2e-10

54.24

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Query:  SSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW
        S+S  ++  +S + EED ES +LFEKL++ ER+R++ ++EL+RK N+QLERQLVMAS W
Subjt:  SSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

Sequences

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CDS sequence

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mRNA sequence

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ATGCTTACCTCCGAAATAGCTACCAAAGATCGCTCCCGAAACCGCATTTCTACTTTCCAGAAGTTCTGTAATCATCGAGTTTTCACTTCAAAAGCTTCAAGTTCGGACAC
GGATGCGGTGGTAGCGTCCACAAATGTGGAGGAAGACGTCGAGTCTGCTCAGCTATTCGAGAAATTAAAGGATGCTGAGCGACAACGGGTAAACAAGTTGAAAGAGCTTC
AGAGGAAGGTGAATTTGCAATTAGAGAGGCAGCTTGTAATGGCTTCTAGTTGGTAGGGCCTTACTGACCATGCGGGGAAAATTAAAGGGAACTGAAAGAGATCCCGAGAA
CTCGCACAAAATTAATTTGAGTGATTGCAAGCAATGTCCAGTTCATTGAGTACTCAAATTATGGCCAAACAATGTCAGGTAGTCTCAGTACATTCTCTTTATATTTTAGA
ACGCGTGCACATTTTTCTTGTTTAGTTTATTTAGAAGCAAGAAAAAGGAAAAAAGAAAACAAA

Protein sequence

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MLTSEIATKDRSRNRISTFQKFCNHRVFTSKASSSDTDAVVASTNVEEDVESAQLFEKLKDAERQRVNKLKELQRKVNLQLERQLVMASSW

CmoCh07G008230 (gene) of Cucurbita moschata (Rifu) v1 genome