CuGenDBv2

Gene ID	CmoCh07G008330
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	SWIM-type domain-containing protein
Genome location	Cmo_Chr07:3890494..3890829
RNA-Seq Expression	CmoCh07G008330
Synteny	CmoCh07G008330
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148660.1 uncharacterized protein LOC101204643 isoform X1 [Cucumis sativus]

1.7e-43

86.73

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+DD+NHLFA+VLSQKD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

XP_008441058.1 PREDICTED: uncharacterized protein LOC103485285 [Cucumis melo]

5.0e-43

85.71

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+D++NHLFA+VLSQKD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

XP_023003249.1 uncharacterized protein LOC111496915 isoform X1 [Cucurbita maxima]

1.4e-45

91.84

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        MTTELHSTYWLD YADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDD+NHLFAEVLSQKD SVSH+VWNPGSEFSFCACSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

XP_023003250.1 uncharacterized protein LOC111496915 isoform X2 [Cucurbita maxima]

1.8e-45

91.75

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQ
        MTTELHSTYWLD YADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDD+NHLFAEVLSQKD SVSH+VWNPGSEFSFCACSWSMQ NLCKHVI ++
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQ

XP_031743010.1 uncharacterized protein LOC101204643 isoform X2 [Cucumis sativus]

1.7e-43

86.73

Show/hide

Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+DD+NHLFA+VLSQKD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIZ0 SWIM-type domain-containing protein

8.3e-44

86.73

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+DD+NHLFA+VLSQKD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

A0A1S3B2L2 uncharacterized protein LOC103485285

2.4e-43

85.71

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+D++NHLFA+VLSQKD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

A0A5A7SLI4 SWIM zinc finger family protein

2.4e-43

85.71

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        +TTELHSTYWLD YADESDSFQNVK+EYISSTSWHRALQIPDSSVT+D++NHLFA+VLSQKD+S+SHVVWNPGSEFSFC CSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

A0A6J1KR90 uncharacterized protein LOC111496915 isoform X2

8.9e-46

91.75

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQ
        MTTELHSTYWLD YADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDD+NHLFAEVLSQKD SVSH+VWNPGSEFSFCACSWSMQ NLCKHVI ++
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQ

A0A6J1KSS4 uncharacterized protein LOC111496915 isoform X1

6.8e-46

91.84

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV
        MTTELHSTYWLD YADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDD+NHLFAEVLSQKD SVSH+VWNPGSEFSFCACSWSMQ NLCKHVI V +
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G60560.1 SWIM zinc finger family protein

7.9e-39

71.88

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Query:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIV
        +TTELHS+YWLD YADESDSFQNVK+EYI+STSW+RA++IPDS+VT+D+ N L A+V SQ+DS V+ VVWNPGSEF+FC C+WS+Q NLCKH+I V
Subjt:  MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIV

AT4G13970.1 zinc ion binding

1.9e-16

40.86

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Query:  TELHSTYWLDLYADESDSFQNVKDEYISS-TSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVI
        T++HS +WLD Y+ + +  +  K+E++S  TS+ +AL IPDS V +   + + A++  + D +  HVVWNPGS+F  C+CSW+ +  +CKH+I
Subjt:  TELHSTYWLDLYADESDSFQNVKDEYISS-TSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVI

Sequences

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CDS sequence

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ATGACCACTGAGTTGCATTCGACCTATTGGCTAGATCTCTATGCTGATGAAAGTGACTCGTTTCAAAATGTCAAGGATGAGTATATTTCTTCTACTTCTTGGCACCGTGC
TTTGCAAATTCCGGATTCTTCAGTTACCATGGATGACAAGAATCACCTTTTTGCCGAAGTTTTGAGCCAAAAGGACAGCAGTGTTTCACATGTAGTGTGGAATCCAGGGT
CAGAATTCTCATTTTGTGCTTGTTCTTGGTCAATGCAACGAAATCTTTGCAAACACGTGATCATTGTCCAAGTTACAAACCTTCCTTATCTTTTCAATCATTTGAGAAGA
TATTGA

mRNA sequence

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Protein sequence

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MTTELHSTYWLDLYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDKNHLFAEVLSQKDSSVSHVVWNPGSEFSFCACSWSMQRNLCKHVIIVQVTNLPYLFNHLRR
Y

CmoCh07G008330 (gene) of Cucurbita moschata (Rifu) v1 genome