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CmoCh07G008590 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G008590
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCOPII coat assembly protein SEC16, putative
Genome locationCmo_Chr07:4060559..4061038
RNA-Seq ExpressionCmoCh07G008590
SyntenyCmoCh07G008590
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595160.1 hypothetical protein SDJN03_11713, partial [Cucurbita argyrosperma subsp. sororia]7.8e-7498.76Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP--SASAAAFNSPTAASPANSGYEISIRNRLV
        MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP  SASAAAFNSPTAASPANSGYEISIRNRLV
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP--SASAAAFNSPTAASPANSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

KAG7027175.1 hypothetical protein SDJN02_11186, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-7297.52Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP--SASAAAFNSPTAASPANSGYEISIRNRLV
        MADSAA KTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP  SASAAAFNSPTAASPA SGYEISIRNRLV
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILP--SASAAAFNSPTAASPANSGYEISIRNRLV

Query:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  KQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

XP_022963126.1 uncharacterized protein LOC111463426 [Cucurbita moschata]2.4e-75100Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ
        MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ

Query:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

XP_022972767.1 uncharacterized protein LOC111471276 [Cucurbita maxima]2.4e-7095.6Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ
        MADSAAQ+TYAAPSSPASIL+RRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSS QSYTSLKDILPS   AAFNSPTAASPANSGYEISIRNRLVKQ
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ

Query:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        AAWAYLQPMSASSYSTGSN FHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

XP_023518519.1 uncharacterized protein LOC111781995 [Cucurbita pepo subsp. pepo]4.3e-7295.71Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSAS----AAAFNSPTAASPANSGYEISIRNR
        MADSAAQKTYAAPSSPA ILSRRTSIPSSAIMPPPNVAVSPPLSSPID RILSSKSSSQSYTSLKDILPSAS    AAAFNSPTAASPANSGYEISIRNR
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSAS----AAAFNSPTAASPANSGYEISIRNR

Query:  LVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        LVKQAAWAYLQPMS SSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  LVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

TrEMBL top hitse value%identityAlignment
A0A1S3CHC6 uncharacterized protein LOC1035009271.4e-4775Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVS-PPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVK
        MA SAAQ TY  PS     L R T +PSS  MPPPN  VS PP  SPI+L +LS KSSSQSYTSLKDILPSASAAA NSPTAASPANS YEISIRNRLVK
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVS-PPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        QAAWAYLQPMSASSYS G NFFHRF LRFS  NPI +  GFI  SIIPAI+R  RFCICL
Subjt:  QAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A5A7SL81 Putative COPII coat assembly protein SEC161.4e-4775Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVS-PPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVK
        MA SAAQ TY  PS     L R T +PSS  MPPPN  VS PP  SPI+L +LS KSSSQSYTSLKDILPSASAAA NSPTAASPANS YEISIRNRLVK
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVS-PPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVK

Query:  QAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        QAAWAYLQPMSASSYS G NFFHRF LRFS  NPI +  GFI  SIIPAI+R  RFCICL
Subjt:  QAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A6J1HF81 uncharacterized protein LOC1114634261.2e-75100Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ
        MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ

Query:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A6J1I5R0 uncharacterized protein LOC1114712761.1e-7095.6Show/hide
Query:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ
        MADSAAQ+TYAAPSSPASIL+RRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSS QSYTSLKDILPS   AAFNSPTAASPANSGYEISIRNRLVKQ
Subjt:  MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQ

Query:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        AAWAYLQPMSASSYSTGSN FHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Subjt:  AAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

A0A6J1IS66 uncharacterized protein LOC1114788203.6e-4876.07Show/hide
Query:  MADSAAQKTYAAPS---SPASILSRRTSIPSSAIMPPPNVAVSP-PLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNR
        MA SAAQKTY  PS   SPA+ L RR+ IPSSA MPP N  +SP P  SPIDLR+L SKSSSQSYTSLKDILPS SA A NSPTAASPANSGYEI IRNR
Subjt:  MADSAAQKTYAAPS---SPASILSRRTSIPSSAIMPPPNVAVSP-PLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNR

Query:  LVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
        LVKQAAWAYLQPMSASSYS G N FHRFWLRFS  NPI++ LGFIRG IIP+I+RV R CIC+
Subjt:  LVKQAAWAYLQPMSASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52520.1 unknown protein1.8e-0747.73Show/hide
Query:  LSSPIDLRILSSKSSSQS----YTSLKDILPSASAAAFNSPT---AASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNFFHR
        +S  +DL ++S   SS+     YTSLKDILPS+S    +SP    A + A SG  I+IRNRLVKQAA +YLQP S  + S+  +F  R
Subjt:  LSSPIDLRILSSKSSSQS----YTSLKDILPSASAAAFNSPT---AASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNFFHR

AT5G06280.1 unknown protein7.0e-1243.75Show/hide
Query:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPSASAAAFNSPT---AASP--ANSGYEISIRNRLVKQAAWA
        SPA+ L R  SI +   + PP    ++A +PP  S  D  ++S K SS  +YTSL+DI+ S   ++ N P+   + SP  + +  +ISIRNRLVKQAA +
Subjt:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPSASAAAFNSPT---AASP--ANSGYEISIRNRLVKQAAWA

Query:  YLQP--MSASSYSTGSNFFHRFWLRFSA
        YLQP  +++S  S GS FF R WL  SA
Subjt:  YLQP--MSASSYSTGSNFFHRFWLRFSA

AT5G06280.3 unknown protein7.0e-1243.75Show/hide
Query:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPSASAAAFNSPT---AASP--ANSGYEISIRNRLVKQAAWA
        SPA+ L R  SI +   + PP    ++A +PP  S  D  ++S K SS  +YTSL+DI+ S   ++ N P+   + SP  + +  +ISIRNRLVKQAA +
Subjt:  SPASILSRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSKSSS-QSYTSLKDILPSASAAAFNSPT---AASP--ANSGYEISIRNRLVKQAAWA

Query:  YLQP--MSASSYSTGSNFFHRFWLRFSA
        YLQP  +++S  S GS FF R WL  SA
Subjt:  YLQP--MSASSYSTGSNFFHRFWLRFSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATTCCGCCGCACAAAAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAGCCGCAGAACCTCGATTCCCTCCTCCGCTATCATGCCCCCACCAAACGT
CGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAGTCCTCTTCTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCTCCGCCG
CCGCCTTCAACTCTCCCACTGCCGCATCGCCGGCCAACTCCGGCTACGAAATTTCCATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCC
GCTTCTTCCTATTCCACCGGCTCAAATTTCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCC
GGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATTCCGCCGCACAAAAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAGCCGCAGAACCTCGATTCCCTCCTCCGCTATCATGCCCCCACCAAACGT
CGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAGTCCTCTTCTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCTCCGCCG
CCGCCTTCAACTCTCCCACTGCCGCATCGCCGGCCAACTCCGGCTACGAAATTTCCATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCC
GCTTCTTCCTATTCCACCGGCTCAAATTTCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCC
GGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA
Protein sequenceShow/hide protein sequence
MADSAAQKTYAAPSSPASILSRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSSQSYTSLKDILPSASAAAFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMS
ASSYSTGSNFFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL