CuGenDBv2

Gene ID	CmoCh07G008800
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Small nuclear ribonucleoprotein G
Genome location	Cmo_Chr07:4163962..4166350
RNA-Seq Expression	CmoCh07G008800
Synteny	CmoCh07G008800
Gene Ontology terms	GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0005685 - U1 snRNP (cellular component) GO:0005686 - U2 snRNP (cellular component) GO:0005687 - U4 snRNP (cellular component) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0034719 - SMN-Sm protein complex (cellular component) GO:0043186 - P granule (cellular component) GO:0071004 - U2-type prespliceosome (cellular component) GO:0071011 - precatalytic spliceosome (cellular component) GO:0071013 - catalytic step 2 spliceosome (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR044641 - Sm-like protein Lsm7/SmG IPR034098 - Small nuclear ribonucleoprotein G IPR010920 - LSM domain superfamily IPR001163 - LSM domain, eukaryotic/archaea-type

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595179.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-33

97.56

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]

1.3e-32

93.9

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]

5.0e-32

93.9

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV  VIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

XP_022962865.1 probable small nuclear ribonucleoprotein G [Cucurbita moschata]

2.0e-33

97.56

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]

4.5e-33

96.34

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHH9 Small nuclear ribonucleoprotein G

6.4e-33

93.9

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G

6.4e-33

93.9

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G

6.4e-33

93.9

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

A0A6J1HGA2 Small nuclear ribonucleoprotein G

9.8e-34

97.56

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

A0A6J1I955 Small nuclear ribonucleoprotein G

9.8e-34

97.56

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMV  VIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

SwissProt top hits

e value

%identity

Alignment

O82221 Probable small nuclear ribonucleoprotein G

1.0e-32

88.75

Show/hide

Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMV  VIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G

7.0e-29

84.62

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQI + ANR++VGTLRGFDQFMNLVVDNTVEVNGNEK +IGMV  VIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G

9.8e-15

58.9

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Query:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVRVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++  IGMV  VIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVRVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G

9.8e-15

58.9

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Query:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVRVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +K+N  R V G LRGFD FMNLV+D  VE+    ++  IGMV  VIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV-NGNEKTEIGMVVRVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G

1.5e-15

60.27

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Query:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTEIGMVVRVIRGNSVVTVEALEPV
        PP++KKYMDK++ +K+N  R V G LRGFD FMN+V+D+TV E   N K  IGMV  VIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTV-EVNGNEKTEIGMVVRVIRGNSVVTVEALEPV

Arabidopsis top hits

e value

%identity

Alignment

AT2G03870.1 Small nuclear ribonucleoprotein family protein

2.3e-06

36.99

Show/hide

Query:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVRVIRGNSVVTV
        DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G++  V RG +V+ V
Subjt:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVRVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein

2.3e-06

36.99

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Query:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVRVIRGNSVVTV
        DL K++DK +Q+K+   R V GTL+G+DQ +NLV+D  VE            ++   +G++  V RG +V+ V
Subjt:  DLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEV---------NGNEKTEIGMVVRVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G

7.4e-34

88.75

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Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMV  VIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G

9.7e-26

86.57

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Query:  MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR
        MDKKLQIK+NANR+V GTLRGFDQFMNLVVDNTVEVNGN+KT+IGMV  VIRGNS+VTVEALEPV R
Subjt:  MDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein

9.7e-34

88.75

Show/hide

Query:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIK+NANR+VVGTLRGFDQFMNLVVDNTVEVNG++KT+IGMV  VIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNR

Sequences

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CDS sequence

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ATGAGTAGGTCAGGCCAGCCTCCAGATCTTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCA
ATTTATGAATCTAGTCGTTGACAACACCGTGGAAGTGAACGGTAACGAGAAAACCGAAATCGGCATGGTGGTGCGTGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAG
CACTTGAACCTGTAAACAGGATGCAGTGA

mRNA sequence

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ACCTGCTTCTCGATTGATTAGGGTTTTTCCTTCCTCTGATCATTCTTCTACCAAAACCTCTTCCCATCTCTCGTTCTTCACCATGAGTAGGTCAGGCCAGCCTCCAGATC
TTAAAAAATACATGGACAAGAAGCTTCAGATAAAAATGAATGCTAATCGCTTGGTAGTTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTCGTTGACAACACC
GTGGAAGTGAACGGTAACGAGAAAACCGAAATCGGCATGGTGGTGCGTGTGATTAGGGGCAATAGCGTGGTAACCGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTG
ATGGTGCACGCGTTGGAATTTGCTGCTCTGTTTCATAGATTGAGTGAGTAAAACATTCGGAACTGTTGCATTTGTAATTTTGGGATGTTACGAATATCAGATGGATTTCT
TGTGCTCCCATCATTCTGAACACCTGGTTTATAAATTTCAGCGATGGGGTTTCTGTATTATGGATTCAATTACCTTGCAACTCTTAGTGTATGAAACCCATCGTATCACT
TGAAGATGTGTTCATTAATCCCATTACGGAGGACCCAAAAAGAAGACATAGTTTCAACCCAGTTTGTATCAAGTCCCAACTTCAATTTACATAGCTTGTCATTCTGAGTT
TGTTCGAGTTTTTCACTGAATGAGAGTCGGGATTACGATGTAATCCTTAGAACTTTTTGTAGTAGTCGTACTTCCATTTTGCAGGAACGTTGGGGAAGGAGTTTAGCATT
ACACTATCTGCACGACAAAACCATCGTGCAGGAATTGTCCGAGCTCTTCTAGTCCTTCGATGGTCGAAGAAGAAGATGGTCCAAAGGTCAAACATTCCCATTGACTTTTC
CATGAAATCAGGCTGTTGTTTCTTCATGGGCAAGTGCAACTGCCTGGGAAGTCTTTTAGCATTTAGCCATTGAAAAGTCTTAAACCCAAAACATTGTTCTACTTTTCTTT
CATTCCCAAAGGTTAGGTCTAAAGATAAG

Protein sequence

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MSRSGQPPDLKKYMDKKLQIKMNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTEIGMVVRVIRGNSVVTVEALEPVNRMQ

CmoCh07G008800 (gene) of Cucurbita moschata (Rifu) v1 genome