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CmoCh07G008830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G008830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBEST Arabidopsis thaliana protein match is: plastid movement impaired 2 .
Genome locationCmo_Chr07:4175766..4176278
RNA-Seq ExpressionCmoCh07G008830
SyntenyCmoCh07G008830
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595182.1 hypothetical protein SDJN03_11735, partial [Cucurbita argyrosperma subsp. sororia]4.4e-8394.71Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
        MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISC EL        DEELHKWRPSLQSIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

KAG7027198.1 hypothetical protein SDJN02_11209, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-8294.12Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
        MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKV+
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISC EL        DEELHKWRPSLQSIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

XP_022962863.1 uncharacterized protein LOC111463230 [Cucurbita moschata]4.9e-90100Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
        MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

XP_022972617.1 uncharacterized protein LOC111471158 [Cucurbita maxima]2.0e-8395.29Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
        MGNCLIV+Q PIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHL+QTTKLLSGHLYFLIPTAG EA EKRGKKAVRFAEPEKETGGGEGKVM
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEE  +DDEELHKWRPSLQSIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

XP_023518412.1 uncharacterized protein LOC111781910 [Cucurbita pepo subsp. pepo]1.3e-8294.74Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAIS-DAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKV
        MGNCL+VQQNPIRIMKPDGKILEYKSP RVFQVLSDFSGHAIS DAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFA+PEKETGGGEGKV
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAIS-DAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKV

Query:  MRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        MRIKVVMTKKELEEMVERGGITAD+MI KIK+GSGEISCRELEEEE  DDDEELHKWRPSLQSIPESEVAC
Subjt:  MRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

TrEMBL top hitse value%identityAlignment
A0A0A0KHH5 Uncharacterized protein1.8e-6176.16Show/hide
Query:  NCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVMRI
        NCL +   PIRIMK DGKILEYKSPTRVFQVLSDFSGH ISDAVPV+HHL +T KLLSGHLYFLIP    E  EK+ KKAVRFAEPEKET  G G V+RI
Subjt:  NCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVMRI

Query:  KVVMTKKELEEMVERGGITADEMICKIKSGSGEISCR-ELEEEEDDDDDE---ELHKWRPSLQSIPESEVAC
        KVVMTKKEL+EMVERGGI+A+EMICKIK+G GEIS R E+EEEEDDDDD+   EL +W+P L+SIPESEVAC
Subjt:  KVVMTKKELEEMVERGGITADEMICKIKSGSGEISCR-ELEEEEDDDDDE---ELHKWRPSLQSIPESEVAC

A0A1S3CHA7 uncharacterized protein LOC1035009005.7e-6073.99Show/hide
Query:  NCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGE--GKVM
        NCL V   PIRIMK DGKILEYKSPTRVFQVLSDFSGH ISDAVPVTHHL +T KLLSGHLYFLIP    E  EK+ KKAVRFAEPEKET      G V+
Subjt:  NCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGE--GKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCR---ELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKEL+EMVERGGI+A+EMICKIK+G GEIS R   E EEEE++D++ EL +W+P L+SIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCR---ELEEEEDDDDDEELHKWRPSLQSIPESEVAC

A0A6J1HG15 uncharacterized protein LOC1114632302.4e-90100Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
        MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

A0A6J1I5B2 uncharacterized protein LOC1114711589.6e-8495.29Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM
        MGNCLIV+Q PIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHL+QTTKLLSGHLYFLIPTAG EA EKRGKKAVRFAEPEKETGGGEGKVM
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVM

Query:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEE  +DDEELHKWRPSLQSIPESEVAC
Subjt:  RIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

A0A6J1IRC0 uncharacterized protein LOC1114777659.7e-6072.67Show/hide
Query:  NCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEK----ETGGGEGK
        NCL V Q PIRIMK DGKILEYKSPTRVFQVLSDFSGH ISDAVPV+ HL  T KLL+GHLYFLIPT   EA EK+ KK VRFA+ EK    E GGG G+
Subjt:  NCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEK----ETGGGEGK

Query:  VMRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC
        V+RIK+VMTKKEL+EMVERGGI+ DEM+CKIKSGSGEISC ELEE E+        +W+P+LQSIPESEVAC
Subjt:  VMRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64700.1 unknown protein1.1e-0437.5Show/hide
Query:  MGNCLI------VQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAV-----PVTH-HLQQTTKLLSGHLYFLIP
        MGNCL        +   I+++K DG +LE+ SP     V   FSGHA+  AV     P+ H HL     L+ G  Y+L P
Subjt:  MGNCLI------VQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAV-----PVTH-HLQQTTKLLSGHLYFLIP

AT3G10120.1 unknown protein6.1e-2235.48Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGH-AISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGE-KRGKKAVRFAEPEKE-------
        MGNCL++++  I+IM+ DGK++EY+ P +V  +L+ FS H ++ D++    HL    KLL G LY+L+P         K+  K VRFA PE E       
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGH-AISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGE-KRGKKAVRFAEPEKE-------

Query:  --------TGGGEGKVMRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHK--WRPSLQSIPESE
                T      V+R+K+V++K+ELE++++ G +              E+  R L ++   DDD+E HK  WRP L SIPE++
Subjt:  --------TGGGEGKVMRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHK--WRPSLQSIPESE

AT3G21680.1 unknown protein3.8e-0840.22Show/hide
Query:  KRGKKAVRFAEPEKETGGGEGKVMRIKVVMTKKELEEMV-ERGGITADEMICKIKSGSG-EISCRELEEEEDDDDDEELHKWRPSLQSIPES
        + GK + R  E  + +   E KV+RIKVV+TKKEL +++  + GI + + +  +   SG  IS    EE+E ++ DE    WRP+L+SIPES
Subjt:  KRGKKAVRFAEPEKETGGGEGKVMRIKVVMTKKELEEMV-ERGGITADEMICKIKSGSG-EISCRELEEEEDDDDDEELHKWRPSLQSIPES

AT5G03890.1 unknown protein6.1e-2237.77Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKE---------
        MGNCL++++  I+I++ DGK+LEY+ P  V  +L+ FSGH+IS       HL    KLLSG LY+L+PT      +K+  K V FA PE E         
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKE---------

Query:  ---------TGGGEGK---VMRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESE
                   G + K   V+R+K+V+ K+ELE++++ G +   EM+ +       +  + L    DDDD E    WRP+L SIPESE
Subjt:  ---------TGGGEGK---VMRIKVVMTKKELEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESE

AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1)2.0e-0428.77Show/hide
Query:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPV------THHLQQTTKLLSGHLYFLI
        MGN ++V++N +++MK DG I   K+P        ++ G  + D+  V         L+    L   H YFL+
Subjt:  MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPV------THHLQQTTKLLSGHLYFLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAACTGTTTGATCGTCCAACAAAACCCCATCAGAATCATGAAACCCGACGGCAAAATCCTCGAATACAAATCCCCAACAAGAGTATTCCAAGTCCTCTCCGACTT
CTCCGGCCACGCCATCTCCGACGCCGTTCCAGTCACCCACCATCTCCAACAGACCACCAAGCTCCTCAGCGGCCACCTCTATTTCCTGATCCCCACGGCGGGGCCGGAGG
CAGGGGAGAAAAGGGGGAAGAAGGCGGTTCGTTTTGCAGAGCCGGAGAAGGAAACCGGCGGCGGGGAAGGGAAGGTGATGAGAATAAAGGTAGTGATGACGAAGAAAGAG
CTGGAGGAGATGGTTGAAAGAGGGGGAATTACGGCGGATGAAATGATTTGTAAGATCAAAAGTGGGAGTGGGGAAATTAGTTGCAGAGAATTGGAGGAAGAAGAAGATGA
TGATGATGATGAGGAGTTGCACAAATGGAGGCCTTCTCTTCAGAGCATACCGGAAAGTGAAGTTGCTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGAACTGTTTGATCGTCCAACAAAACCCCATCAGAATCATGAAACCCGACGGCAAAATCCTCGAATACAAATCCCCAACAAGAGTATTCCAAGTCCTCTCCGACTT
CTCCGGCCACGCCATCTCCGACGCCGTTCCAGTCACCCACCATCTCCAACAGACCACCAAGCTCCTCAGCGGCCACCTCTATTTCCTGATCCCCACGGCGGGGCCGGAGG
CAGGGGAGAAAAGGGGGAAGAAGGCGGTTCGTTTTGCAGAGCCGGAGAAGGAAACCGGCGGCGGGGAAGGGAAGGTGATGAGAATAAAGGTAGTGATGACGAAGAAAGAG
CTGGAGGAGATGGTTGAAAGAGGGGGAATTACGGCGGATGAAATGATTTGTAAGATCAAAAGTGGGAGTGGGGAAATTAGTTGCAGAGAATTGGAGGAAGAAGAAGATGA
TGATGATGATGAGGAGTTGCACAAATGGAGGCCTTCTCTTCAGAGCATACCGGAAAGTGAAGTTGCTTGCTAG
Protein sequenceShow/hide protein sequence
MGNCLIVQQNPIRIMKPDGKILEYKSPTRVFQVLSDFSGHAISDAVPVTHHLQQTTKLLSGHLYFLIPTAGPEAGEKRGKKAVRFAEPEKETGGGEGKVMRIKVVMTKKE
LEEMVERGGITADEMICKIKSGSGEISCRELEEEEDDDDDEELHKWRPSLQSIPESEVAC