CuGenDBv2

Gene ID	CmoCh07G009630
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	Cmo_Chr07:4708872..4709627
RNA-Seq Expression	CmoCh07G009630
Synteny	CmoCh07G009630
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AFJ73122.1 photosystem II CP43 protein, partial [Leucobryum javense]

1.1e-32

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSSYLS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS +S
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSSYLS

ANS11015.1 photosystem II 44 kDa protein [Euphronia guianensis]

1.1e-32

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG  + +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

QWZ47577.1 photosystem II CP43 chlorophyll apoprotein [Plagiomnium acutum]

1.1e-32

87.8

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSSYLSHY
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS +S +
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSSYLSHY

YP_009436532.1 photosystem II 43 kDa protein [Cyphia dentariifolia]

1.4e-32

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

YP_009679599.1 PsbC [Trichopus zeylanicus subsp. travancoricus]

1.4e-32

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

TrEMBL top hits

e value

%identity

Alignment

A0A1C8QFD6 Photosystem II CP43 reaction center protein

5.2e-33

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG  + +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

A0A291F3X7 Photosystem II CP43 reaction center protein

6.7e-33

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

A0A4Y6GJN6 Photosystem II CP43 reaction center protein

6.7e-33

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

A0A6G7L1Q0 Photosystem II CP43 reaction center protein

6.7e-33

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

R4I698 Photosystem II CP43 reaction center protein (Fragment)

5.2e-33

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSSYLS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS +S
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSSYLS

SwissProt top hits

e value

%identity

Alignment

A2T329 Photosystem II CP43 reaction center protein

2.4e-35

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

A9LYI1 Photosystem II CP43 reaction center protein

2.4e-35

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

Q3V538 Photosystem II CP43 reaction center protein

2.4e-35

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

Q70Y07 Photosystem II CP43 reaction center protein

2.4e-35

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

Q85AU0 Photosystem II CP43 reaction center protein

2.4e-35

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

1.7e-36

92.21

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Query:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS
        +GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSG    +SS
Subjt:  TGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGFSSCMSS

ATCG00680.1 photosystem II reaction center protein B

1.1e-06

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Query:  GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WG
        G+LL  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG
Subjt:  GKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WG

Sequences

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CDS sequence

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ATGAGAGTGAACGAACTACTGAACGAGCCTGATTGTCCCTATTCTTGGCCAGTTCTTTCTCTTCTCTTTCACTCGGGTTTCCCAATTCCCTACCTGGGCGACAGTATAAA
GAAGAGGGAATCCGAGAATATGCGAGGAAGAAGCAAGATAGCAACACAGCCAGCAACCGGTAAACTACTGGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGG
CCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGCGTAGGT
CCTGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGATTTTCCTCTTGTATGTCTAGCTATCTGTCGCATTATCTATCTTACTCCAATGGCGCTACAAAGGC
CGAATAG

mRNA sequence

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Protein sequence

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MRVNELLNEPDCPYSWPVLSLLFHSGFPIPYLGDSIKKRESENMRGRSKIATQPATGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVG
PGGEVIDTFPYFVSGFSSCMSSYLSHYLSYSNGATKAE

CmoCh07G009630 (gene) of Cucurbita moschata (Rifu) v1 genome