CuGenDBv2

Gene ID	CmoCh07G009640
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem I iron-sulfur center
Genome location	Cmo_Chr07:4710969..4711639
RNA-Seq Expression	CmoCh07G009640
Synteny	CmoCh07G009640
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0009522 - photosystem I (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009055 - electron transfer activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	IPR017896 - 4Fe-4S ferredoxin-type, iron-sulphur binding domain IPR017900 - 4Fe-4S ferredoxin, iron-sulphur binding, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

YP_001122848.1 photosystem I subunit VII [Phaseolus vulgaris]

3.8e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

YP_001430151.1 photosystem I subunit VII [Cuscuta reflexa]

3.8e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PW RCKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

YP_009141471.1 photosystem I subunit VII [Lathyrus tingitanus]

3.8e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

YP_009334710.1 photosystem I subunit VII [Camassia scilloides]

3.8e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

YP_010048387.1 photosystem I subunit VII [Pentasachme caudatum]

3.8e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

TrEMBL top hits

e value

%identity

Alignment

A0A218KGA0 Photosystem I iron-sulfur center

1.9e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

A0A410HFC6 Photosystem I iron-sulfur center

1.9e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

A0A6M8P9Q0 Photosystem I iron-sulfur center

1.9e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

D5MAH2 Photosystem I iron-sulfur center

1.9e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

G3ETV0 Photosystem I iron-sulfur center

1.9e-17

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

SwissProt top hits

e value

%identity

Alignment

A4GGE7 Photosystem I iron-sulfur center

5.0e-20

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

A7M9B0 Photosystem I iron-sulfur center

5.0e-20

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PW RCKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

A8W3G7 Photosystem I iron-sulfur center

2.5e-19

82.46

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS  VKIYDTCIGCTQCVRACPT  LEM PW RCKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

P10793 Photosystem I iron-sulfur center

5.0e-20

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

P42046 Photosystem I iron-sulfur center

5.0e-20

84.21

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PWG CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

Arabidopsis top hits

e value

%identity

Alignment

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding

2.3e-20

82.46

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Query:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES
        MS SVKIYDTCIGCTQCVRACPT  LEM PW  CKAKQIASA PR  DC+GCKRCES
Subjt:  MSQSVKIYDTCIGCTQCVRACPT--LEMRPWGRCKAKQIASAPPRRSDCLGCKRCES

Sequences

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CDS sequence

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ATGTCACAGTCAGTAAAGATTTATGATACATGTATAGGGTGTACTCAATGTGTCCGAGCTTGCCCCACATTAGAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAAT
AGCTTCGGCTCCACCAAGAAGATCAGACTGTCTTGGTTGTAAGAGATGTGAATCCGGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGTTCAGGGAATAGCGGGGC
AGGTTCAGTTCTACAACTCTCTTCGTGACGCACCATATCAATTAAACTTGGCAAGTTTGTCTTGCTTGCCATCGTCCCCGTTTTGGCGTGAGTTTCTTCTGGGTCAGGAA
GTCACTCCTCGCCCCATTATCCGTCTTGACCAGAGCGACCCGCCTCCACGTTCTCTTCTAGTGCACTATTGCTGTCATCTCCTTCTCTTGGACCGGAGACACTTACCAGA
GGCTAGTGAACAAGCTGCGGATCGGTAA

mRNA sequence

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Protein sequence

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MSQSVKIYDTCIGCTQCVRACPTLEMRPWGRCKAKQIASAPPRRSDCLGCKRCESGSGHVGTRFKSTVQGIAGQVQFYNSLRDAPYQLNLASLSCLPSSPFWREFLLGQE
VTPRPIIRLDQSDPPPRSLLVHYCCHLLLLDRRHLPEASEQAADR

CmoCh07G009640 (gene) of Cucurbita moschata (Rifu) v1 genome