CuGenDBv2

Gene ID	CmoCh07G009650
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L16, chloroplastic
Genome location	Cmo_Chr07:4723929..4726043
RNA-Seq Expression	CmoCh07G009650
Synteny	CmoCh07G009650
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000114 - Ribosomal protein L16 IPR016180 - Ribosomal protein L10e/L16 IPR020798 - Ribosomal protein L16, conserved site IPR036920 - Ribosomal protein L10e/L16 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

APW82670.1 ribosomal protein L16 [Citrullus lanatus subsp. vulgaris]

5.0e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

PHT42142.1 50S ribosomal protein L16, chloroplastic [Capsicum baccatum]

3.4e-43

76.23

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWIT
        N I FG+YA+QALEPAWITSRQIEAGRRAMTR ARRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYW                       ALEPAWIT
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWIT

Query:  SRQIEAGRRAMTRNARRGGKIW
        SRQIEAGRRAMTRNARRGGKIW
Subjt:  SRQIEAGRRAMTRNARRGGKIW

YP_009317423.1 ribosomal protein L16 [Coccinia grandis]

5.0e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

YP_009326027.1 ribosomal protein L16 [Citrullus lanatus]

5.0e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

YP_009752280.1 ribosomal protein L16 [Trichosanthes baviensis]

5.0e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LEA5 Ribosomal protein L16

2.4e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

A0A2G2WAC2 50S ribosomal protein L16, chloroplastic

1.6e-43

76.23

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWIT
        N I FG+YA+QALEPAWITSRQIEAGRRAMTR ARRGGKIWVRIFPDKPVTLRP ETRMGSGKGSPEYW                       ALEPAWIT
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWIT

Query:  SRQIEAGRRAMTRNARRGGKIW
        SRQIEAGRRAMTRNARRGGKIW
Subjt:  SRQIEAGRRAMTRNARRGGKIW

A0A6H0EQG8 50S ribosomal protein L16, chloroplastic

2.4e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

A0A6H0EU89 50S ribosomal protein L16, chloroplastic

2.4e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

A0A6M3RTV2 50S ribosomal protein L16, chloroplastic

2.4e-39

100

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

SwissProt top hits

e value

%identity

Alignment

A0ZZ72 50S ribosomal protein L16, chloroplastic

7.3e-41

96.25

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

B1NWI7 50S ribosomal protein L16, chloroplastic

1.1e-41

98.75

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

Q0ZIY1 50S ribosomal protein L16, chloroplastic

7.3e-41

96.25

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

Q2L940 50S ribosomal protein L16, chloroplastic

7.3e-41

96.25

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

Q4VZN1 50S ribosomal protein L16, chloroplastic

3.3e-41

98.75

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        N ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

Arabidopsis top hits

e value

%identity

Alignment

AT2G28830.1 PLANT U-BOX 12

2.5e-28

65.22

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Query:  NRESFRRSLRSCNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        +R    + + S   IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DKPVT+RP ETRMG GKG+P +WVAVVKPG+I+Y
Subjt:  NRESFRRSLRSCNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

ATCG00790.1 ribosomal protein L16

1.3e-40

92.5

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Query:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY
        NRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMGSGKGSPEYWVAVVKPG+ILY
Subjt:  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILY

ATMG00080.1 ribosomal protein L16

2.4e-15

43.75

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Query:  RSLRSC----NRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI
        R  R C     ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWVR+F D P+T +PTE RMG GKG+P  W+A V  G+I
Subjt:  RSLRSC----NRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI

Sequences

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CDS sequence

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ATGAATCGAGAGTCTTTCAGAAGGAGCTTGAGGTCATGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGA
AGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTT
CAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATNGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCT
TGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGCCGGAAGATGGGCTTTTTCTTCTTTTCTTTTTCGG
TATGCCGCTCCGCGATCAAGGAGCGAAGCTACTCGACGAGAAGGGGAGAGGAGCGAAGCTATGA

mRNA sequence

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Protein sequence

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MNRESFRRSLRSCNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPA
WITSRQIEAGRRAMTRNARRGGKIWPEDGLFLLFFFGMPLRDQGAKLLDEKGRGAKL

CmoCh07G009650 (gene) of Cucurbita moschata (Rifu) v1 genome