CuGenDBv2

Gene ID	CmoCh07G009670
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S3
Genome location	Cmo_Chr07:4732381..4733431
RNA-Seq Expression	CmoCh07G009670
Synteny	CmoCh07G009670
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR044954 - Ribosomal protein S3, mitochondrial, plant

Homology

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GenBank top hits

e value

%identity

Alignment

ADL63821.1 ribosomal protein S3, partial [Cucurbita pepo]

3.1e-19

100

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

ADL63882.1 ribosomal protein S3, partial [Hypecoum imberbe]

2.6e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

ADL63981.1 ribosomal protein S3, partial [Sabia sp. Qiu 91025]

2.6e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

XP_042504764.1 LOW QUALITY PROTEIN: ribosomal protein S3, mitochondrial-like [Macadamia integrifolia]

2.6e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

YP_003587365.1 ribosomal protein S3 [Cucurbita pepo]

1.5e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

TrEMBL top hits

e value

%identity

Alignment

D5I3F1 Ribosomal protein S3

7.5e-19

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSK LRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

E5DM03 Ribosomal protein S3 (Fragment)

1.5e-19

100

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

E5DMG0 Ribosomal protein S3 (Fragment)

1.3e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

E5DMH1 Ribosomal protein S3 (Fragment)

1.3e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

M9WG71 Ribosomal protein S3

1.3e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

SwissProt top hits

e value

%identity

Alignment

P27754 Ribosomal protein S3, mitochondrial

2.2e-20

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

P27928 Ribosomal protein S3, mitochondrial

2.5e-19

88.46

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Query:  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        E+ DREKQNEIRIWPKK Q YGYHDR+PSRKKN SKSLRVSGAFKHPKYAGV
Subjt:  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

P46773 Ribosomal protein S3, mitochondrial

1.1e-19

90.38

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Query:  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        E+ DREKQNEIRIWPKK Q YGYHDRSPSRKKN SKSLRVSGAFKHPKYAGV
Subjt:  ENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

P49386 Ribosomal protein S3, mitochondrial

6.1e-18

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDR+KQNEIR WPKKKQ YGYHDR+PS KKNLSKSLR+SGAFKHPKY GV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

Q04716 Ribosomal protein S3, mitochondrial

2.9e-20

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDREKQNEIRIWPKKKQ YGYHDRSPS KKNLSKSLRVSGAFKHPKYAG+
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00090.1 structural constituent of ribosome;protein binding

3.3e-19

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Query:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV
        DDR+KQNEIR WPKKKQ YGYHDR PS KKNLSKSLR+SGAFKHPKYAGV
Subjt:  DDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGV

Sequences

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CDS sequence

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ATGAATGAGAGTGAACAGGAAGGAAATCATAGGGCGAAGAGAAAGAAGAAGATATTCCTTTCTTTACGGGAGAGTCAATTCGTCATAGAAAGAAGGAACCTGCTTTCTAC
TATAGATGATCGAGAAAGAATCAATCTCTTCCGAACGACCGATGGCTTGGTAAGCAAGCAACCTGTTATGTCTGTATTTGCCCGCGAAAACGACGACCGGGAAAAGCAAA
ACGAAATTAGGATTTGGCCGAAAAAGAAGCAAGACTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAG
CATCCGAAATATGCCGGAGTT

mRNA sequence

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Protein sequence

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MNESEQEGNHRAKRKKKIFLSLRESQFVIERRNLLSTIDDRERINLFRTTDGLVSKQPVMSVFARENDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAFK
HPKYAGV

CmoCh07G009670 (gene) of Cucurbita moschata (Rifu) v1 genome