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CmoCh07G009790 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G009790
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-binding protein S1FA-like
Genome locationCmo_Chr07:4818127..4819835
RNA-Seq ExpressionCmoCh07G009790
SyntenyCmoCh07G009790
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143239.1 DNA-binding protein S1FA [Cucumis sativus]2.5e-3791.01Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

XP_008449267.1 PREDICTED: DNA-binding protein S1FA-like [Cucumis melo]2.1e-3689.89Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRM NVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

XP_022962636.1 DNA-binding protein S1FA-like [Cucurbita moschata]2.4e-40100Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

XP_022972581.1 DNA-binding protein S1FA-like [Cucurbita maxima]3.9e-3895.51Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIR++DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQ TLP KRKKPVSKKKMKRERLKQGISAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]2.7e-3996.63Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIR+ADARGFNPGLIVLLVVGGLLLAFLAGNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQGISAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

TrEMBL top hitse value%identityAlignment
A0A0A0KEM3 DNA-binding protein S1FA1.2e-3791.01Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

A0A1S3BLN5 DNA-binding protein S1FA-like1.0e-3689.89Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRM NVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

A0A5A7TZ88 DNA-binding protein S1FA-like1.0e-3689.89Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRM NVIR+ +ARGFNPGLIVLLVVGGLL AFL GNYALY+YAQKTLPPK+KKPVSKKKMKRERLKQG+SAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

A0A6J1HDT2 DNA-binding protein S1FA-like1.2e-40100Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

A0A6J1I6D0 DNA-binding protein S1FA-like1.9e-3895.51Show/hide
Query:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        MEDDFDFGDKVPPAVNRMGNVIR++DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQ TLP KRKKPVSKKKMKRERLKQGISAPGE
Subjt:  MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA12.9e-2075.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL  NY LYVYAQK LPP++KKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

P42552 DNA-binding protein S1FA1.8e-2273.53Show/hide
Query:  IREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        + E +A+G NPGLIVLLV+GGLLL FL GN+ LY YAQK LPPK+KKP+SKKKMKRERLKQG++ PGE
Subjt:  IREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

P42553 DNA-binding protein S1FA11.3e-2067.57Show/hide
Query:  NRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        ++  N+I E   +G NPG IVLLVV  LL+ F  GNYALY+YAQKTLPP++KKPVSKKK+KRE+LKQG+SAPGE
Subjt:  NRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

Q7XLX6 DNA-binding protein S1FA22.6e-2172.86Show/hide
Query:  NVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        NV+ E   +G NPG+IVL+VV   LL F  GNYALYVYAQKTLPP++KKPVSKKKMKRE+LKQG+SAPGE
Subjt:  NVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

Q93VI0 DNA-binding protein S1FA38.4e-2070.31Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        +++G NPGLIVLLV+GGLLL FL GN+ LY YAQK LPP++KKPVSKKKMK+E++KQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein2.3e-2068.75Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        +A+G NPGLIVLLV+GGLL+ FL  NY +Y+YAQK LPP++KKP+SKKK+KRE+LKQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

AT3G09735.1 S1FA-like DNA-binding protein6.0e-2170.31Show/hide
Query:  DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        +++G NPGLIVLLV+GGLLL FL GN+ LY YAQK LPP++KKPVSKKKMK+E++KQG+  PGE
Subjt:  DARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

AT3G53370.1 S1FA-like DNA-binding protein2.1e-2175.38Show/hide
Query:  ADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        A+A+G NPGLIVLLVVGG LL FL  NY LYVYAQK LPP++KKPVSKKK+KRE+LKQG+  PGE
Subjt:  ADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE

AT3G53370.2 S1FA-like DNA-binding protein6.4e-0769.7Show/hide
Query:  YAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE
        +A K LPP++KKPVSKKK+KRE+LKQG+  PGE
Subjt:  YAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACGACTTCGATTTCGGTGACAAGGTTCCGCCGGCCGTCAATCGCATGGGGAACGTGATTAGAGAGGCAGATGCAAGAGGATTCAATCCAGGGCTGATTGTGCT
GCTTGTAGTGGGGGGGCTGCTATTGGCTTTCCTTGCTGGGAATTACGCTCTGTACGTGTATGCGCAGAAGACACTCCCTCCAAAAAGGAAGAAACCAGTTTCAAAGAAGA
AGATGAAGAGGGAGAGATTGAAGCAAGGTATTTCGGCTCCTGGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
GCAAAATTTGTGTACGGCGTCGTTTCGAAGTCCGTGGGCGGAATAGCCTAAACCCACCGTTCGTCATTTTCATGTAATCCGCTCCTTTTTTTGTATTTTTCTGGAAGCTT
CTGCGGTTCATCTTTGTAGCACAGAACCATTAACAGGAGCTCCTACTCAAGGCCATCTCTAAGCTTCTGAATTTCAGCCATGGAAGACGACTTCGATTTCGGTGACAAGG
TTCCGCCGGCCGTCAATCGCATGGGGAACGTGATTAGAGAGGCAGATGCAAGAGGATTCAATCCAGGGCTGATTGTGCTGCTTGTAGTGGGGGGGCTGCTATTGGCTTTC
CTTGCTGGGAATTACGCTCTGTACGTGTATGCGCAGAAGACACTCCCTCCAAAAAGGAAGAAACCAGTTTCAAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTAT
TTCGGCTCCTGGAGAGTAATAGCCTAGTAGTTGTTGTTGTTGTAGTAGTAGACGTTGTGTTCCTGTTTTTATTATTTTTTTTTTCTTTTCTTGTTTGAACTAACAAGTTC
TTCCCGTGAATTTCAGTGTTTGAAGAGTTGTTTTGTTTATGCTGTTCAGTTCGTTAAAATCTTAACATCCCAACTAGAAGTTTATCGTCCCTTGCATCTGTAGAGATGAG
AAATATGAATAAGAACATAGTTTATATGATATGTTATGCTGTTCTATCTTTCTAAATTAGGAGGATTGAGAGAGATCCATTGGATAATAAAATAATTAGGAGGATTGAGA
GCGATCCATTAGATATTTGGGCGC
Protein sequenceShow/hide protein sequence
MEDDFDFGDKVPPAVNRMGNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRERLKQGISAPGE