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CmoCh07G010000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G010000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionValine-tRNA ligase
Genome locationCmo_Chr07:4911426..4913023
RNA-Seq ExpressionCmoCh07G010000
SyntenyCmoCh07G010000
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047322.1 putative transmembrane protein [Cucumis melo var. makuwa]3.9e-1782.76Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAA II+IS++ S VLI+GMV+GYKYWQKKRR+QDQARFLKLFEDGDDIEDELGL+D
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

XP_022143802.1 uncharacterized protein LOC111013628 [Momordica charantia]7.8e-1886.21Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MH AAII+IS +VSTVLI+G+V+GYKYWQKKRREQDQARFLKLFEDGDDIEDELGL D
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

XP_022963066.1 uncharacterized protein LOC111463378 isoform X1 [Cucurbita moschata]9.9e-21100Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

XP_022972748.1 uncharacterized protein LOC111471262 isoform X1 [Cucurbita maxima]1.3e-2098.28Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAAAIILISVIVSTVLI+GMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

XP_023518189.1 uncharacterized protein LOC111781731 [Cucurbita pepo subsp. pepo]1.3e-2098.28Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAAAIILISVIVSTVLI+GMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

TrEMBL top hitse value%identityAlignment
A0A1S3BH72 uncharacterized protein LOC1034898061.9e-1782.76Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAA II+IS++ S VLI+GMV+GYKYWQKKRR+QDQARFLKLFEDGDDIEDELGL+D
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

A0A5A7TV39 Putative transmembrane protein1.9e-1782.76Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAA II+IS++ S VLI+GMV+GYKYWQKKRR+QDQARFLKLFEDGDDIEDELGL+D
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

A0A6J1CRX4 uncharacterized protein LOC1110136283.8e-1886.21Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MH AAII+IS +VSTVLI+G+V+GYKYWQKKRREQDQARFLKLFEDGDDIEDELGL D
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

A0A6J1HE82 uncharacterized protein LOC111463378 isoform X14.8e-21100Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

A0A6J1ICG3 uncharacterized protein LOC111471262 isoform X16.3e-2198.28Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MHAAAIILISVIVSTVLI+GMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09645.1 unknown protein1.1e-0447.17Show/hide
Query:  IILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        +IL+ V    V +    + YK WQKK+R++  AR LKLFE+ D++E ELGL D
Subjt:  IILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

AT1G57765.1 unknown protein1.3e-0548.08Show/hide
Query:  IVSTVLIVGMVIG-----YKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        ++  +L  G V G     YK WQKK+R++  AR LKLFE+ D++E ELGL D
Subjt:  IVSTVLIVGMVIG-----YKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

AT1G57765.2 unknown protein1.3e-0548.08Show/hide
Query:  IVSTVLIVGMVIG-----YKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        ++  +L  G V G     YK WQKK+R++  AR LKLFE+ D++E ELGL D
Subjt:  IVSTVLIVGMVIG-----YKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

AT3G53490.1 unknown protein1.7e-1563.79Show/hide
Query:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND
        MH   ++LI V++  V+ VG+++GYKYW+KK+R+Q+QARFLKLFEDGDDIEDELGL +
Subjt:  MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLND

AT5G02720.1 unknown protein1.5e-0645.1Show/hide
Query:  ILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLN
        I+  V+ +T+++VG V  +K+ Q+ ++++DQARF++LFE+ D+ EDELGL+
Subjt:  ILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGCTGCTGCAATCATACTTATCAGTGTTATAGTTTCAACTGTGTTAATTGTTGGTATGGTGATAGGATACAAGTATTGGCAAAAAAAGAGAAGAGAGCAAGATCA
GGCCAGATTCCTGAAGCTGTTTGAAGATGGGGATGACATCGAGGATGAATTGGGCCTTAACGATTTCATGGCCAATACCCCAGGATGGATTCTAGGAGGGCCACAGCCTC
AGAACTGCAGTCTTGTTCTAGTCTCAATTCTTGCCCATTCCAGTCTTGTTCATCTTCTCCAAGTCCAAACCAATATCGAAAACAAGCCCAATCAAATTCATAGTATAGCC
ACTTTGATTGTCATAAGGGTCTTGGCCATTGAAGATGAGATCCGAGGAGTCGAGTTCATTCTGCGAATTCTCGAAACAACTGAGGTTAGTCCGCTCACCCTCGGGATCAT
CTTCAATTGGGTCTCCATCAGAAAACTGGTGTTGGCCTGTAAAACCAGTCCAAAATGGAGAGGGACTCCGACCGGGGTAGTCGTAGCTGTTTGCATTGGCCATGAGCAGG
CCAATGGAGTTAGAGCCACTGCAATTCATAACAGATACTCAAAAGTTGTGTCTTGGGGGATCAAAGTCTTTCTTGGAGGGGATGAAAAGCAGCTAAAGGAAGAGAAAAAG
AAAGGCATCATCACCAGGCAAGAGATATGCCTTGCGCAGACCGTCGGCGTAGTGGCTAACATGTGCTACACACCATTGCTCTTATCTTCTGAGGTACATGCCAATGAAGG
CACTCTTTCAGTCCCTAGACATGCAATTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATGCTGCTGCAATCATACTTATCAGTGTTATAGTTTCAACTGTGTTAATTGTTGGTATGGTGATAGGATACAAGTATTGGCAAAAAAAGAGAAGAGAGCAAGATCA
GGCCAGATTCCTGAAGCTGTTTGAAGATGGGGATGACATCGAGGATGAATTGGGCCTTAACGATTTCATGGCCAATACCCCAGGATGGATTCTAGGAGGGCCACAGCCTC
AGAACTGCAGTCTTGTTCTAGTCTCAATTCTTGCCCATTCCAGTCTTGTTCATCTTCTCCAAGTCCAAACCAATATCGAAAACAAGCCCAATCAAATTCATAGTATAGCC
ACTTTGATTGTCATAAGGGTCTTGGCCATTGAAGATGAGATCCGAGGAGTCGAGTTCATTCTGCGAATTCTCGAAACAACTGAGGTTAGTCCGCTCACCCTCGGGATCAT
CTTCAATTGGGTCTCCATCAGAAAACTGGTGTTGGCCTGTAAAACCAGTCCAAAATGGAGAGGGACTCCGACCGGGGTAGTCGTAGCTGTTTGCATTGGCCATGAGCAGG
CCAATGGAGTTAGAGCCACTGCAATTCATAACAGATACTCAAAAGTTGTGTCTTGGGGGATCAAAGTCTTTCTTGGAGGGGATGAAAAGCAGCTAAAGGAAGAGAAAAAG
AAAGGCATCATCACCAGGCAAGAGATATGCCTTGCGCAGACCGTCGGCGTAGTGGCTAACATGTGCTACACACCATTGCTCTTATCTTCTGAGGTACATGCCAATGAAGG
CACTCTTTCAGTCCCTAGACATGCAATTTACTAATAATGTTAGTACACCATTTTTATGGCTTCAACTCAACAATATTTGGTTATATTTCGTTCGTCCTTTCTCTCGAGAA
AGTAATAACTCAGTCCATAAACTTTTGTTTGTGTTGTTACCAAATTTTGGGCGGAAAAAATATATTTGTCCTTCACGTGAAAACAACGGTAAATTTAGTTCGTAAATTTT
AATGTGTTGTTACTGAAAGATGCTTTTTCTTGTGTTT
Protein sequenceShow/hide protein sequence
MHAAAIILISVIVSTVLIVGMVIGYKYWQKKRREQDQARFLKLFEDGDDIEDELGLNDFMANTPGWILGGPQPQNCSLVLVSILAHSSLVHLLQVQTNIENKPNQIHSIA
TLIVIRVLAIEDEIRGVEFILRILETTEVSPLTLGIIFNWVSIRKLVLACKTSPKWRGTPTGVVVAVCIGHEQANGVRATAIHNRYSKVVSWGIKVFLGGDEKQLKEEKK
KGIITRQEICLAQTVGVVANMCYTPLLLSSEVHANEGTLSVPRHAIY