CuGenDBv2

Gene ID	CmoCh07G010600
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Genome location	Cmo_Chr07:5389659..5391240
RNA-Seq Expression	CmoCh07G010600
Synteny	CmoCh07G010600
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

AAL77140.1 Putative pol polyprotein [Oryza sativa Japonica Group]

2.8e-35

53.42

Show/hide

Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K TAQ A++ IK  R+GVQRV++ N +QL++E  +I FKDGE+VDDFSMRI GLAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKNTISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG
        ++ +EEV GRLR+VEQ K+   +A + +      LL TEEEWLA+ +    L+D    S G
Subjt:  DLMVEEVIGRLRNVEQWKKNTISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG

ABA94350.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]

8.9e-34

54.42

Show/hide

Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K TAQ A++ IK  R+GVQ V+++N +QL++E  +I F+DGE+VD+FSMRI GLAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKNTISA----LNKESCLLLTEEEWLARLK
        +L +EEV GRLR+VEQ K+   +A    ++    LL TEEEWLA+ +
Subjt:  DLMVEEVIGRLRNVEQWKKNTISA----LNKESCLLLTEEEWLARLK

CAE03285.2 OSJNBb0046P18.1 [Oryza sativa Japonica Group]

2.3e-34

47.57

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Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN++ T G ++++ E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK
        +L +EEV G LR+VEQ K+       S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G      PK
Subjt:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK

CAE03692.2 OSJNBb0026E15.10 [Oryza sativa Japonica Group]

8.0e-35

53.42

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Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K TAQ A++ IK  R+GVQRV+++N +QL++E  +I FKD E+VDDFSMRI GLAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKNTISA----LNKESCLLLTEEEWLARLK----LRDDIGESNG
        +L +EEV GRLR+VEQ K+   +A    ++    LL TEEEWLA+ +    L+D    S+G
Subjt:  DLMVEEVIGRLRNVEQWKKNTISA----LNKESCLLLTEEEWLARLK----LRDDIGESNG

CAH68021.1 H0807C06-H0308C08.8 [Oryza sativa]

1.2e-35

48.65

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Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK
        +L +EEV GRLR+VEQ K+       S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G      PK
Subjt:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK

TrEMBL top hits

e value

%identity

Alignment

A0A5S6RCQ1 Putative pol polyprotein

1.3e-35

53.42

Show/hide

Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K TAQ A++ IK  R+GVQRV++ N +QL++E  +I FKDGE+VDDFSMRI GLAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKNTISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG
        ++ +EEV GRLR+VEQ K+   +A + +      LL TEEEWLA+ +    L+D    S G
Subjt:  DLMVEEVIGRLRNVEQWKKNTISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG

Q01HC5 H0807C06-H0308C08.8 protein

6.0e-36

48.65

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Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK
        +L +EEV GRLR+VEQ K+       S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G      PK
Subjt:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK

Q7X7K3 OSJNBb0046P18.1 protein

1.1e-34

47.57

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Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K T Q A++ IK  R+GVQ V+++N +QL++E  +I FKDGE+VDDFSMRI  LAN++ T G ++++ E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK
        +L +EEV G LR+VEQ K+       S ++   CLL TEEEWLA+ +    L+D    S+G       QG  +   G      PK
Subjt:  DLMVEEVIGRLRNVEQWKKN----TISALNKESCLLLTEEEWLARLK----LRDDIGESNGQYCFSSQQGELSTPHGGGMACTPK

Q7XPB1 OSJNBb0026E15.10 protein

3.9e-35

53.42

Show/hide

Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K TAQ A++ IK  R+GVQRV+++N +QL++E  +I FKD E+VDDFSMRI GLAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKNTISA----LNKESCLLLTEEEWLARLK----LRDDIGESNG
        +L +EEV GRLR+VEQ K+   +A    ++    LL TEEEWLA+ +    L+D    S+G
Subjt:  DLMVEEVIGRLRNVEQWKKNTISA----LNKESCLLLTEEEWLARLK----LRDDIGESNG

Q8SAW7 Retrotransposon protein, putative, Ty1-copia subclass

1.3e-35

53.42

Show/hide

Query:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN
        +L+ K TAQ A++ IK  R+GVQRV++ N +QL++E  +I FKDGE+VDDFSMRI GLAN++ T G +++E E+V+K+LQVVP+HL+Q+AISIETLLDVN
Subjt:  SLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRITGLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVN

Query:  DLMVEEVIGRLRNVEQWKKNTISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG
        ++ +EEV GRLR+VEQ K+   +A + +      LL TEEEWLA+ +    L+D    S G
Subjt:  DLMVEEVIGRLRNVEQWKKNTISALNKE----SCLLLTEEEWLARLK----LRDDIGESNG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGATAACAACCTTTAGCACTTTATTCCTAAAGAAAGATCTCATATATGAAGAGGAACGTTCGAGATCTCACCTTGCGGATTTCTCTCGAATCTTGACAGAAGATGG
AACTTCAAAAACACGAGTCCTCCTTTTCTTCAAGAAGAAGCTCCAACGTACGTCTCTCTCCACCAAGCGCACCGCACAATCGGCCTACAAGGGAATCAAATACCATCGGG
TCGGTGTACAACGAGTGCAGAAATCCAACATCGAGCAGCTGCAGCAGGAGCTCTCGGAGATCCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACG
GGGCTTGCCAACAGCATCACCACTTTCGGTGGCAGCATGAGCGAGACAGAAATCGTGAAGAAGATGCTGCAGGTCGTCCCCGATCACCTCGAGCAAGTCGCAATTTCAAT
TGAGACATTGCTTGACGTGAACGACCTAATGGTGGAAGAGGTGATCGGAAGACTGCGTAACGTCGAGCAGTGGAAGAAAAATACTATTTCAGCTCTCAACAAGGAGAGTT
GTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGTGACGACATCGGCGAGAGCAATGGGCAATACTGTTTTAGCTCTCAACAAGGAGAGTTGTCTACT
CCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCATGA

mRNA sequence

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Protein sequence

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MKITTFSTLFLKKDLIYEEERSRSHLADFSRILTEDGTSKTRVLLFFKKKLQRTSLSTKRTAQSAYKGIKYHRVGVQRVQKSNIEQLQQELSEIRFKDGESVDDFSMRIT
GLANSITTFGGSMSETEIVKKMLQVVPDHLEQVAISIETLLDVNDLMVEEVIGRLRNVEQWKKNTISALNKESCLLLTEEEWLARLKLRDDIGESNGQYCFSSQQGELST
PHGGGMACTPKAP

CmoCh07G010600 (gene) of Cucurbita moschata (Rifu) v1 genome