; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh07G011340 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G011340
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsigma factor binding protein 2, chloroplastic-like
Genome locationCmo_Chr07:5999705..6000199
RNA-Seq ExpressionCmoCh07G011340
SyntenyCmoCh07G011340
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027424.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-8297.62Show/hide
Query:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD
        MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD
Subjt:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD

Query:  YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE----AAAVMYESYAM
        YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE    AAAVMYESYAM
Subjt:  YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE----AAAVMYESYAM

XP_022931925.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]2.3e-84100Show/hide
Query:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD
        MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD
Subjt:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD

Query:  YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM
        YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM
Subjt:  YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM

XP_022966643.1 uncharacterized protein LOC111466266 [Cucurbita maxima]1.4e-7392.02Show/hide
Query:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDS
        GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQELTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y S
Subjt:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDS

Query:  LMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM
        LMMNNNIPTTLGVELPAED+LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  AAA+MYESYAM
Subjt:  LMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM

XP_023518833.1 uncharacterized protein LOC111782231 [Cucurbita pepo subsp. pepo]5.6e-7593.9Show/hide
Query:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHST-TAAGQDYD
        GGGGGGNRNDHTSLGGVRRRKPTKKT QPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSD DAGATPDLLHST  AA QDYD
Subjt:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHST-TAAGQDYD

Query:  SLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM
        SL MNNNIPTTLGVELPAEDYL+GSFYDDFDDLILPPPLIGNFS FLPAAE  AAAVMYESYAM
Subjt:  SLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM

XP_038882812.1 sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]2.3e-4468.52Show/hide
Query:  GGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAG-ATPDLLHSTTAAGQDYD---
        G    N+H  L  V RRKPTKKTKQP NKKKPIKVVYISNPMKV+TSASKFMALVQELTG+DADFPDPSKF  S    G A+ DLLH+T + G D +   
Subjt:  GGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAG-ATPDLLHSTTAAGQDYD---

Query:  -SLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA
         +L+MNNN   +L VELP +D ++GSFYDDFDDLI PPP+IGNFSG LPA  AAAV+YESYA
Subjt:  -SLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA

TrEMBL top hitse value%identityAlignment
A0A0A0L3J8 VQ domain-containing protein9.1e-3963.1Show/hide
Query:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNK-KKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDE-DAGATPDLLHSTTAAG
        MD G   G   +DH +L  V RRKPTKKTKQP N+ KKPIKVVYISNPMKV+TSAS FMALVQELTGQDADFPDPSKF  S   D  A+ D L++T ++G
Subjt:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNK-KKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDE-DAGATPDLLHSTTAAG

Query:  QDYD---SLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA
         + D   +L++N+N  ++L  E+PAED ++GSFYDDFDDLI P P+IGNFSG LP A  AAV+YES A
Subjt:  QDYD---SLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA

A0A6J1EY87 sigma factor binding protein 2, chloroplastic-like3.7e-4065.43Show/hide
Query:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKF-HSSDEDAGATPDLLHSTTAAGQDYD
        G  G G  N H  L GV RRKPTKKTKQP NK KPIKVVYISNPMKV+ SAS FMALVQ+LTGQDADFPDPS F  ++  DA A PD +H+TTA     D
Subjt:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKF-HSSDEDAGATPDLLHSTTAAGQDYD

Query:  SLMMNNNIPTTLGVELPAE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA
        + +MNNN P +L VE+P E D  +GSFYDD DDLI PPP+IGN+   LPAA A AV+YESYA
Subjt:  SLMMNNNIPTTLGVELPAE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA

A0A6J1F0S9 sigma factor binding protein 1, chloroplastic-like1.1e-84100Show/hide
Query:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD
        MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD
Subjt:  MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQD

Query:  YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM
        YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM
Subjt:  YDSLMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM

A0A6J1HS32 sigma factor binding protein 2, chloroplastic-like isoform X17.7e-3864.6Show/hide
Query:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDS
        G  G G  N H  L GV RRKPTKKTKQP NK KPIKVVYISNPMKV+ SAS FMALVQ+LTGQDA+FPD SKF      A A PD +H TTA      +
Subjt:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDS

Query:  LMMNNNIPTTLGVELPAE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA
        LMMNNN   +L VE P E D L+G+FYDD DDLI PPP+IGN+   LPAA A AV+YESYA
Subjt:  LMMNNNIPTTLGVELPAE-DYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYA

A0A6J1HSP6 uncharacterized protein LOC1114662666.7e-7492.02Show/hide
Query:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDS
        GGGGGGN NDHT LGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSAS FMALVQELTGQDADFPDPSKF SSDE AGATP LLHST AAGQ+Y S
Subjt:  GGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDS

Query:  LMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM
        LMMNNNIPTTLGVELPAED+LVGSFYDDFDDLILPPPLIGNFSGFLPAAE  AAA+MYESYAM
Subjt:  LMMNNNIPTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAE--AAAVMYESYAM

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic1.5e-0655.74Show/hide
Query:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSSD
        R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + D
Subjt:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSSD

Q9LDH1 Sigma factor binding protein 1, chloroplastic6.1e-0835.07Show/hide
Query:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDED--------AGATPDLLHSTTAAGQDYDSLMMNNNIPTTL
        RK  K+ K+  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   D            P +LH      +D D     N      
Subjt:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDED--------AGATPDLLHSTTAAGQDYDSLMMNNNIPTTL

Query:  GVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGF
                          +D+ LP  +   FSGF
Subjt:  GVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGF

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein1.1e-0755.74Show/hide
Query:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSSD
        R P K+ ++     KPIKV YISNPM+V+T  SKF  LVQELTGQD AD  P P+ F + D
Subjt:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQD-ADF-PDPSKFHSSD

AT3G56710.1 sigma factor binding protein 14.4e-0935.07Show/hide
Query:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDED--------AGATPDLLHSTTAAGQDYDSLMMNNNIPTTL
        RK  K+ K+  +  KPIKV YISNPM+V+T ASKF  LVQELTGQDA    P   +S   D            P +LH      +D D     N      
Subjt:  RKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDED--------AGATPDLLHSTTAAGQDYDSLMMNNNIPTTL

Query:  GVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGF
                          +D+ LP  +   FSGF
Subjt:  GVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCAACGAAGAAAACAAAACAACCCAACAACAAAAAGAA
ACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACC
CCTCTAAGTTCCACTCCTCCGACGAAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGACCGCCGCCGGCCAGGACTATGATAGTCTAATGATGAATAATAATATC
CCTACTACACTTGGTGTTGAGCTGCCGGCGGAGGACTACCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCCCTCATCGGAAACTTCTCCGG
ATTTCTACCAGCGGCTGAGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCGGCGGCGGCGGCGGCGGCAACCGCAACGACCACACATCTCTCGGCGGCGTCCGCCGACGAAAGCCAACGAAGAAAACAAAACAACCCAACAACAAAAAGAA
ACCCATCAAAGTTGTGTACATATCGAATCCAATGAAGGTTAAAACCAGTGCCTCTAAATTCATGGCTTTGGTCCAAGAGCTCACCGGCCAAGATGCCGACTTTCCCGACC
CCTCTAAGTTCCACTCCTCCGACGAAGACGCCGGAGCCACCCCCGACCTCCTCCACAGCACGACCGCCGCCGGCCAGGACTATGATAGTCTAATGATGAATAATAATATC
CCTACTACACTTGGTGTTGAGCTGCCGGCGGAGGACTACCTTGTTGGTAGCTTTTATGATGACTTTGATGACCTGATTCTTCCTCCTCCCCTCATCGGAAACTTCTCCGG
ATTTCTACCAGCGGCTGAGGCGGCGGCGGTGATGTATGAATCTTATGCAATGTGA
Protein sequenceShow/hide protein sequence
MDGGGGGGGNRNDHTSLGGVRRRKPTKKTKQPNNKKKPIKVVYISNPMKVKTSASKFMALVQELTGQDADFPDPSKFHSSDEDAGATPDLLHSTTAAGQDYDSLMMNNNI
PTTLGVELPAEDYLVGSFYDDFDDLILPPPLIGNFSGFLPAAEAAAVMYESYAM