CuGenDBv2

Gene ID	CmoCh07G012790
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	transcription factor SCREAM2-like
Genome location	Cmo_Chr07:7033518..7034106
RNA-Seq Expression	CmoCh07G012790
Synteny	CmoCh07G012790
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6595565.1 hypothetical protein SDJN03_12118, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-57

97.6

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Query:  ADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK
        ADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL+AFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK
Subjt:  ADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK

Query:  IVKPRVVKRAVKQAIKEWSESNGQT
        IVKP+VVK+AVKQAIKEWSESNGQT
Subjt:  IVKPRVVKRAVKQAIKEWSESNGQT

KAG7027546.1 hypothetical protein SDJN02_11560, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.2e-50

78.91

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEE-----------
        MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL+AFEKLGLEVLDANVSCSDCFQLQAVGEE           
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEE-----------

Query:  -----------------NEDTKIVKPRVVKRAVKQAIKEWSESNGQT
                         NEDTKIVKP+VVK+AVKQAIKEWSESNGQT
Subjt:  -----------------NEDTKIVKPRVVKRAVKQAIKEWSESNGQT

XP_022925050.1 uncharacterized protein LOC111432414 [Cucurbita moschata]

2.5e-59

100

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Query:  MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDT
        MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDT
Subjt:  MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDT

Query:  KIVKPRVVKRAVKQAIKEWSESNGQT
        KIVKPRVVKRAVKQAIKEWSESNGQT
Subjt:  KIVKPRVVKRAVKQAIKEWSESNGQT

XP_022966518.1 uncharacterized protein LOC111466169 [Cucurbita maxima]

2.0e-56

95.97

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Query:  DGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKI
        DGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVY+EKNSPGLLVRIL+AFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK+
Subjt:  DGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKI

Query:  VKPRVVKRAVKQAIKEWSESNGQT
        VKP+VVK+AVKQAIKEWSESNGQT
Subjt:  VKPRVVKRAVKQAIKEWSESNGQT

XP_023518447.1 uncharacterized protein LOC111781937 [Cucurbita pepo subsp. pepo]

3.8e-55

93.6

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Query:  ADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK
        ADGGSEMGSRERKKAA SSSMNHEKPTEFDASTSSSAVVNVESL RGFLI+VYLEKNSPGLL+RIL+AFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK
Subjt:  ADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK

Query:  IVKPRVVKRAVKQAIKEWSESNGQT
        IVKP+VVK+AVKQAIKEWSESN QT
Subjt:  IVKPRVVKRAVKQAIKEWSESNGQT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CLI8 uncharacterized protein LOC103502184

2.6e-41

78.81

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRV
        MGSRERKKAAA+++ +H    EF ASTSSSAVVNVES+ RGFLINV+LE+NSPGLLVRIL+AFEKLGL VLDA++SCSDCFQLQAVGEENE  KI+K +V
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRV

Query:  VKRAVKQAIKEWSESNGQ
        VK AVKQAIKEWSES+GQ
Subjt:  VKRAVKQAIKEWSESNGQ

A0A6J1EGT3 uncharacterized protein LOC111432414

1.2e-59

100

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Query:  MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDT
        MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDT
Subjt:  MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDT

Query:  KIVKPRVVKRAVKQAIKEWSESNGQT
        KIVKPRVVKRAVKQAIKEWSESNGQT
Subjt:  KIVKPRVVKRAVKQAIKEWSESNGQT

A0A6J1GFJ5 uncharacterized protein LOC111453491

3.6e-43

83.9

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRV
        MGSRERKKAAA SS+NH K  EF ASTSSSAVVNVE+L RGFLINV+ E+NSPGLLV+IL+AFEKLGLEVLDA+VSCSDCFQLQAVGEENE TKI+K +V
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRV

Query:  VKRAVKQAIKEWSESNGQ
        VK AVKQAIKEWSESNGQ
Subjt:  VKRAVKQAIKEWSESNGQ

A0A6J1HSD7 uncharacterized protein LOC111466169

9.7e-57

95.97

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Query:  DGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKI
        DGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVY+EKNSPGLLVRIL+AFEKLGLEVLDANVSCSDCFQLQAVGEENEDTK+
Subjt:  DGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKI

Query:  VKPRVVKRAVKQAIKEWSESNGQT
        VKP+VVK+AVKQAIKEWSESNGQT
Subjt:  VKPRVVKRAVKQAIKEWSESNGQT

A0A6J1IM47 uncharacterized protein LOC111477723

1.6e-43

84.75

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Query:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRV
        MGSRERKKAAA SS+NH K  EF ASTSSSAVVNVE L RGFLINV+ E+NSPGLLVRIL+AFEKLGLEVLDA+VSCSDCFQLQAVGEENE TKI+K +V
Subjt:  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRV

Query:  VKRAVKQAIKEWSESNGQ
        VK AVKQAIKEWSESNGQ
Subjt:  VKRAVKQAIKEWSESNGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)

3.0e-18

42.86

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Query:  ERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRA
        ER     ++  +  +PT+       + +V VE+L +GF+INV+  KN PG+LV +L+AFE +GL VL+A  SC+D F L A+G ENED + +    VK+A
Subjt:  ERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRA

Query:  VKQAIKEWSESN
        V  AI+ W E N
Subjt:  VKQAIKEWSESN

AT3G56220.1 transcription regulators

1.7e-16

44.21

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Query:  FDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVG-EENEDTKIVKPRVVKRAVKQAIKEWSESN
        F  S+  + +V VE+L +GF+I V   KN  G+LV +L+ FE LGL+V++A VSC+D F L A+G   N+D   +    VK+AV +AI+ WS+S+
Subjt:  FDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVG-EENEDTKIVKPRVVKRAVKQAIKEWSESN

Sequences

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CDS sequence

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ATGGCGGACGGCGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCATCTTCCTCAATGAATCATGAGAAGCCCACAGAATTTGATGCATCCACAAGCTCTAG
TGCTGTGGTGAATGTCGAGAGTTTAGTGAGAGGATTTCTCATAAACGTATATTTAGAAAAGAATTCGCCTGGATTGTTAGTTCGGATTCTACAAGCCTTCGAGAAATTGG
GACTCGAAGTCCTCGATGCCAACGTGTCTTGTTCCGATTGTTTCCAACTCCAAGCAGTCGGGGAAGAGAATGAAGATACAAAAATCGTAAAGCCCCGAGTGGTGAAAAGA
GCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAACGGGCAGACATGA

mRNA sequence

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Protein sequence

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MADGGSEMGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRILQAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKR
AVKQAIKEWSESNGQT

CmoCh07G012790 (gene) of Cucurbita moschata (Rifu) v1 genome