CuGenDBv2

Gene ID	CmoCh07G013260
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	homeobox-DDT domain protein RLT2-like isoform X3
Genome location	Cmo_Chr07:7489521..7490622
RNA-Seq Expression	CmoCh07G013260
Synteny	CmoCh07G013260
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572264.1 Homeobox-DDT domain protein RLT2, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-08

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

KAG7027595.1 Homeobox-DDT domain protein RLT1 [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-23

100

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLRELDKRKHCAGKDK
        MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLRELDKRKHCAGKDK
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLRELDKRKHCAGKDK

XP_022952972.1 homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita moschata]

1.7e-08

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

XP_023554340.1 homeobox-DDT domain protein RLT2-like isoform X1 [Cucurbita pepo subsp. pepo]

1.7e-08

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

XP_023554342.1 homeobox-DDT domain protein RLT2-like isoform X3 [Cucurbita pepo subsp. pepo]

1.7e-08

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C2D2 homeobox-DDT domain protein RLT2 isoform X4

5.3e-08

77.08

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKES ELA +DERLELME A+SSKGLPSIMSL HETL+ LELF+ +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

A0A6J1GLQ4 homeobox-DDT domain protein RLT2-like isoform X2

8.1e-09

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

A0A6J1GLW4 homeobox-DDT domain protein RLT2-like isoform X3

8.1e-09

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

A0A6J1GND4 homeobox-DDT domain protein RLT2-like isoform X1

8.1e-09

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

A0A6J1HZH7 LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2-like

8.1e-09

81.25

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR
        MAKESTELA EDERLELME A+SSKGLPSIMSL  ETL+ LELFK +R
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLR

SwissProt top hits

e value

%identity

Alignment

F4HY56 Homeobox-DDT domain protein RLT1

4.7e-06

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK
        +AKES +L  EDE+LELME A  SKGLPS++ L H+TLQ LE+++
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK

Q9FFH1 Homeobox-DDT domain protein RLT2

9.0e-05

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK
        +AKES EL  EDERLELME A  +KGLPS+++L  ETLQ L+ ++
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK

Arabidopsis top hits

e value

%identity

Alignment

AT1G28420.1 homeobox-1

3.4e-07

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK
        +AKES +L  EDE+LELME A  SKGLPS++ L H+TLQ LE+++
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK

AT5G44180.1 Homeodomain-like transcriptional regulator

6.4e-06

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK
        +AKES EL  EDERLELME A  +KGLPS+++L  ETLQ L+ ++
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK

AT5G44180.2 Homeodomain-like transcriptional regulator

6.4e-06

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Query:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK
        +AKES EL  EDERLELME A  +KGLPS+++L  ETLQ L+ ++
Subjt:  MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFK

Sequences

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CDS sequence

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ATGGCTAAGGAATCAACGGAACTTGCTGAGGAGGATGAACGCCTGGAACTCATGGAGTTCGCTCTGTCCAGCAAGGGATTACCGTCAATAATGTCTCTTCATCACGAAAC
TTTACAATATCTGGAGTTATTTAAAAGTTTGAGAGAATTAGACAAAAGGAAGCACTGTGCAGGAAAAGATAAGTAG

mRNA sequence

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TTTGCGATTTCCGCAACGGTCACATTGGCCTTCTTCTCCTCCGTTTGATCTTCCTCTTCTTCTTCTTACGGGAAAGAGAAGCAGCAAGACTTAAAACTGCAATCAGAGGG
CCATTGCTCGCCAAATGGCTAAGGAATCAACGGAACTTGCTGAGGAGGATGAACGCCTGGAACTCATGGAGTTCGCTCTGTCCAGCAAGGGATTACCGTCAATAATGTCT
CTTCATCACGAAACTTTACAATATCTGGAGTTATTTAAAAGTTTGAGAGAATTAGACAAAAGGAAGCACTGTGCAGGAAAAGATAAGTAG

Protein sequence

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MAKESTELAEEDERLELMEFALSSKGLPSIMSLHHETLQYLELFKSLRELDKRKHCAGKDK

CmoCh07G013260 (gene) of Cucurbita moschata (Rifu) v1 genome