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CmoCh07G013410 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G013410
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionArabinogalactan peptide 23-like
Genome locationCmo_Chr07:7592745..7593133
RNA-Seq ExpressionCmoCh07G013410
SyntenyCmoCh07G013410
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]6.3e-1379.37Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        MEMK FA A F+AV ASL++VLA++EAA SPAPGPSS  SAT PVVGTLLGASAASLIAYCLQ
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]1.5e-1182.76Show/hide
Query:  FAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        FA A F+ VAASL++VLA++EAA SPAPGPSSAASAT PVVGTLLGASAASLIAYCLQ
Subjt:  FAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

KAG6603249.1 Fructokinase-like 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.2e-0568.85Show/hide
Query:  FAVATFVAV--AASLNIVLATNEAATSPAPGPSS-AASATFPVVGTLLGASAASLIAYCLQ
        FA A  VA+  AASL + LA+ E A +PAPGPSS AA+AT PVVGTLLGAS ASLIA+CLQ
Subjt:  FAVATFVAV--AASLNIVLATNEAATSPAPGPSS-AASATFPVVGTLLGASAASLIAYCLQ

PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]3.1e-0459.68Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL
        ME+K  ++A  VA AASL+ V+A NE   +PAPGPSS ASAT PVVG+L+GAS  S  AY L
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL

XP_018834413.1 arabinogalactan protein 23-like [Juglans regia]5.3e-0457.58Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLAT---NEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        MEMK  A A  VA AAS++ VLA     + + +PAPGPSS ASA FPVVG+++GAS  SL+AY LQ
Subjt:  MEMKTFAVATFVAVAASLNIVLAT---NEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

TrEMBL top hitse value%identityAlignment
A0A200QP69 Uncharacterized protein5.8e-0450.79Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        M+MK  + A  +AVAAS+N  LA +E A +PAPGP+S A  T PV+G+L+GAS  S  A+ +Q
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

A0A2I4FRZ9 arabinogalactan protein 23-like2.6e-0457.58Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLAT---NEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        MEMK  A A  VA AAS++ VLA     + + +PAPGPSS ASA FPVVG+++GAS  SL+AY LQ
Subjt:  MEMKTFAVATFVAVAASLNIVLAT---NEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

A0A2P5CAP7 Uncharacterized protein3.4e-0459.68Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL
        ME+K  + A  VA AASL+ V+A NE   +PAPGPSS ASAT PVVG+L+GAS  S  AY L
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL

A0A2P5F1L3 Uncharacterized protein1.5e-0459.68Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL
        ME+K  ++A  VA AASL+ V+A NE   +PAPGPSS ASAT PVVG+L+GAS  S  AY L
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL

A0A5D3E271 Arabinogalactan peptide 23-like3.0e-1379.37Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        MEMK FA A F+AV ASL++VLA++EAA SPAPGPSS  SAT PVVGTLLGASAASLIAYCLQ
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 232.5e-0451.61Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL
        MEMK  A     A AAS+  V+A  E   +PAPGP+SAASA  P +G+L+GAS  SL +Y L
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL

Arabidopsis top hitse value%identityAlignment
AT3G20865.1 arabinogalactan protein 407.4e-0441.27Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ
        MEMK   VA F++     ++  AT E + +P+PG SSA++  FPVVG+++ AS ++ +A  LQ
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQ

AT3G57690.1 arabinogalactan protein 231.8e-0551.61Show/hide
Query:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL
        MEMK  A     A AAS+  V+A  E   +PAPGP+SAASA  P +G+L+GAS  SL +Y L
Subjt:  MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGACGTTCGCCGTTGCCACCTTCGTTGCCGTTGCTGCCTCCCTGAACATCGTTTTGGCTACTAATGAAGCAGCAACATCCCCGGCCCCCGGCCCGTCCAG
CGCCGCTTCTGCTACCTTCCCTGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCATACTGCCTTCAATCAAACAATGTTGATATGCTCGTATCCTCAA
ATAATACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGACGTTCGCCGTTGCCACCTTCGTTGCCGTTGCTGCCTCCCTGAACATCGTTTTGGCTACTAATGAAGCAGCAACATCCCCGGCCCCCGGCCCGTCCAG
CGCCGCTTCTGCTACCTTCCCTGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCATACTGCCTTCAATCAAACAATGTTGATATGCTCGTATCCTCAA
ATAATACTTAA
Protein sequenceShow/hide protein sequence
MEMKTFAVATFVAVAASLNIVLATNEAATSPAPGPSSAASATFPVVGTLLGASAASLIAYCLQSNNVDMLVSSNNT