; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh07G013660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh07G013660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S28
Genome locationCmo_Chr07:7744702..7748207
RNA-Seq ExpressionCmoCh07G013660
SyntenyCmoCh07G013660
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR009515 - Protein of unknown function DUF1138
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595666.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]7.7e-7275.98Show/hide
Query:  MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTREVSPCSSNLPLSLS
        MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR                      SGYPEVSHASFLTREVSPCSSNLPLSLS
Subjt:  MGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTREVSPCSSNLPLSLS

Query:  SSSPPPAALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKT
        SSSPPPAALLPSTSVPFLATSNQ                   + D +   +KIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKT
Subjt:  SSSPPPAALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKT

Query:  RPEA
        RPEA
Subjt:  RPEA

KAG6603220.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]2.2e-5055.05Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD-ILTLLESEREARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTR
        MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGP++  D +LT  +S      +L+       +  L   V+            S    
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD-ILTLLESEREARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTR

Query:  EVSPCSSNLPLSLSSSSPPPAALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV
        EV    + + L+                          MA+KY+  S +G FA AYI+  LV+DKKIFGGTTP+TV NSEWWEETDKKFQAWPRTAGPPV
Subjt:  EVSPCSSNLPLSLSSSSPPPAALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPV

Query:  VMNPISRQNFIVKTRPEA
        VMNPISRQNFIVKTR EA
Subjt:  VMNPISRQNFIVKTRPEA

XP_022925267.1 uncharacterized protein LOC111432556 [Cucurbita moschata]3.6e-37100Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

XP_022966506.1 uncharacterized protein LOC111466138 [Cucurbita maxima]6.8e-3697.5Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        MA+KYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTR EA
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

XP_023517179.1 uncharacterized protein LOC111781016 [Cucurbita pepo subsp. pepo]2.3e-3697.5Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        MA+KYV ASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

TrEMBL top hitse value%identityAlignment
A0A5A7UM13 Uncharacterized protein1.2e-3084.42Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTR
        MA+KY+  SL+G  A+AYI D+L+SDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK+R
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTR

A0A5J4ZM71 Uncharacterized protein5.4e-3177.38Show/hide
Query:  SNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        S   MA+KY+ +SLVG+FA+A+  DY+++DKKIFGGTTPSTVSN EWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVK+  EA
Subjt:  SNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

A0A6J1EBA8 uncharacterized protein LOC1114325561.7e-37100Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

A0A6J1HPI7 uncharacterized protein LOC1114661383.3e-3697.5Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        MA+KYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTR EA
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

A0A6J1HS56 uncharacterized protein LOC1114672979.2e-3182.5Show/hide
Query:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA
        MA+KY+  S +G FA AY++D LV+DKKIFGGTTPSTV NSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTR EA
Subjt:  MASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-26.8e-2388.89Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

P46302 40S ribosomal protein S281.1e-2390.48Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

Q6PBK3 40S ribosomal protein S281.3e-1879.66Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

Q90YP3 40S ribosomal protein S281.3e-1879.66Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

Q9SR73 40S ribosomal protein S28-11.8e-2392.06Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

Arabidopsis top hitse value%identityAlignment
AT1G01170.1 Protein of unknown function (DUF1138)7.0e-3175.32Show/hide
Query:  SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPE
        +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPVVMNPISRQNFIVKTRPE
Subjt:  SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPE

AT1G01170.2 Protein of unknown function (DUF1138)7.0e-3175.32Show/hide
Query:  SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPE
        +KY+  +L+G+F I+YI D ++SD KIFGGTTP TVSN EWW  TD+KFQAWPRTAGPPVVMNPISRQNFIVKTRPE
Subjt:  SKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPE

AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.3e-2492.06Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR

AT4G00860.1 Protein of unknown function (DUF1138)2.2e-2461.33Show/hide
Query:  YVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPE
        Y+  +L G+  +AY+ D ++SD K+FGGTTP T++N EW   T+++ QAWPR AGPPVVMNPISRQNFIVK+RPE
Subjt:  YVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPE

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.3e-2492.06Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATA
CATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGT
CTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTT
TCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGACGATGGCATCGAAGTACGTTGCAGCTTCTTT
AGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAA
CTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAGAATCGATA
CATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTACTAGAGTCTGAGAGAGAAGCCAGGAGAAATCTGGTTTTTGGTTACTGGCATGTTGTGT
CTCAAACCTTGGATTTGAAGGTAGAATGTTTGAAGAGTGGGTATCCCGAAGTCTCACACGCGTCTTTCTTAACACGCGAAGTTTCTCCCTGCTCTTCCAATTTGCCTCTT
TCTCTCTCGTCTTCCTCACCGCCGCCCGCAGCCCTTCTCCCGTCGACGTCGGTCCCTTTTCTGGCGACATCAAATCAGACGATGGCATCGAAGTACGTTGCAGCTTCTTT
AGTCGGAACATTTGCAATTGCGTATATTGCTGATTACCTTGTTTCTGACAAGAAAATATTTGGAGGAACAACCCCAAGTACTGTTTCGAACAGCGAGTGGTGGGAAGAAA
CTGACAAGAAATTCCAAGCATGGCCTCGTACTGCCGGTCCACCTGTGGTGATGAACCCGATCAGTCGCCAGAATTTCATCGTCAAAACCCGCCCTGAAGCTTAAATGTTA
CATTAGTTGTGAATCTATACACTTTTGATTGGATGGATCATTCTGGTTTGAAACTACTGCCTAGTCATTAAGCAGTTCTAATCTGCCTTGCCTTCATGTTTTGAGTTGGG
AACTTGAAGCAATTCTTGTTGTTCTGATAGTCATTCTTATTTCCTCTTTAAAAGTTGCATCGTTAGTTTGTTATGATGATGATGATGTCATGATGTTGAATCTTAAATAA
TGCAGTGGAAAATTTCCCACCTCCTTCAGACAACGAGCAATCATCATCTTTCTTATTTACTTTGATTTATGAGATCCCCAAGTTCTTCATAGGTGTCTGGTTTGCTTGTT
TATGATTTCTTTGCTTGATAGTCCAAACCCACTGTTAGTTGGTATTGTCGTCTTTGGGTTTTCCTCTAAGGTTTTTAATATTTCGGTTGACGGAGATTTCTTACACCCTT
ATAAAGAATGTGATTTGTTCTCTCCAATTGACGTGGGATCTCACAACCCACCTTGTCATGTGGGACCTCCCAATTCACCCACCTTTGGGGTTTGATGTCCTTGTTGGCAC
ACCACCTTGTGCCCAGCCCTGTGTCCACCCCCTTTTGGGGCTGAAGGCTGGCACACCAACTTGTGTCCAGCCTCGAGTCCACTCCCTTTCAAGGTTGAGCCTCC
Protein sequenceShow/hide protein sequence
MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRNLVFGYWHVVSQTLDLKVECLKSGYPEVSHASFLTREVSPCSSNLPL
SLSSSSPPPAALLPSTSVPFLATSNQTMASKYVAASLVGTFAIAYIADYLVSDKKIFGGTTPSTVSNSEWWEETDKKFQAWPRTAGPPVVMNPISRQNFIVKTRPEA