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CmoCh08G000180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G000180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGSH-induced LITAF domain protein-like
Genome locationCmo_Chr08:95470..98478
RNA-Seq ExpressionCmoCh08G000180
SyntenyCmoCh08G000180
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR006629 - LPS-induced tumour necrosis factor alpha factor
IPR037519 - LITAF domain containing protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025225.1 GSH-induced LITAF domain protein [Cucurbita argyrosperma subsp. argyrosperma]6.5e-6597.5Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCM PLMLGVCFLCPS+DCLWHKYHYCPSCKEKVGDFEK 
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]3.7e-5284.68Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP
        G+  PNAIF DP GVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+SSAAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

XP_022960171.1 GSH-induced LITAF domain protein-like [Cucurbita moschata]2.7e-66100Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

XP_023004350.1 GSH-induced LITAF domain protein-like [Cucurbita maxima]4.4e-6191.2Show/hide
Query:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVG
        MS+DD P     VGKTAP+AIFDDPQGVPIQQTMFRDTPAPFYCVYCG SGLTTVRSK+SSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVG
Subjt:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVG

Query:  DFEKLDKCAVMDPSNWTQQSFALPA
        DFEKLDKCAVMDPSNWTQQS ALPA
Subjt:  DFEKLDKCAVMDPSNWTQQSFALPA

XP_023514783.1 GSH-induced LITAF domain protein-like [Cucurbita pepo subsp. pepo]1.0e-6598.33Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSK+SSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEK 
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

TrEMBL top hitse value%identityAlignment
A0A0A0KDG7 LITAF domain-containing protein1.8e-5284.68Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP
        G+  PNAIF DP GVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+SSAAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

A0A1S3CCH3 uncharacterized protein LOC1034988819.0e-5283.78Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP
        G+  PN IF DPQGVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+S AAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein2.4e-5284.68Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP
        G+  PNAIF DPQGVPIQQTM+RDTPAPF CVYCG SGLTT+RSK+S AAVVGCM+P MLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLD+CAVMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP

Query:  SNWTQQSFALP
         +WTQ S+ALP
Subjt:  SNWTQQSFALP

A0A6J1H6W0 GSH-induced LITAF domain protein-like1.3e-66100Show/hide
Query:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL
        MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL
Subjt:  MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKL

Query:  DKCAVMDPSNWTQQSFALPA
        DKCAVMDPSNWTQQSFALPA
Subjt:  DKCAVMDPSNWTQQSFALPA

A0A6J1KUC0 GSH-induced LITAF domain protein-like2.1e-6191.2Show/hide
Query:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVG
        MS+DD P     VGKTAP+AIFDDPQGVPIQQTMFRDTPAPFYCVYCG SGLTTVRSK+SSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVG
Subjt:  MSEDDKP-----VGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVG

Query:  DFEKLDKCAVMDPSNWTQQSFALPA
        DFEKLDKCAVMDPSNWTQQS ALPA
Subjt:  DFEKLDKCAVMDPSNWTQQSFALPA

SwissProt top hitse value%identityAlignment
Q94CD4 GSH-induced LITAF domain protein3.6e-4267.86Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP
        G   PNAI+ DP G PIQQT++RDTPAPF C+YCG +GLT +RSK   AAVV CM+P MLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP

Query:  SNWTQQSFALPA
          W Q SFALPA
Subjt:  SNWTQQSFALPA

Arabidopsis top hitse value%identityAlignment
AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2.6e-4367.86Show/hide
Query:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP
        G   PNAI+ DP G PIQQT++RDTPAPF C+YCG +GLT +RSK   AAVV CM+P MLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VMDP
Subjt:  GKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDP

Query:  SNWTQQSFALPA
          W Q SFALPA
Subjt:  SNWTQQSFALPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGAGGACGACAAGCCGGTCGGAAAGACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTT
CTACTGTGTTTATTGTGGAATTTCCGGTCTCACCACCGTCAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTT
GTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAAC
TGGACACAGCAAAGCTTTGCGTTGCCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTGTAAACCCCAATTAAATTAAAAAGAAAAAACCAAGGTATCATACGACGTCTCCATGCGAGGCCAAACCTAAACCAATTTTCTTACGCCAAATTTCTCCTCTTTCCCT
TCCATCGTAATCCTCCCCTTCCGCCGTTTTTCGTTTTTCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAATATGTCCGAGGACGACAAGCCGGTCGGAAA
GACCGCGCCCAACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAATTTCCGGTC
TCACCACCGTCAGATCAAAGGTAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAG
TATCACTATTGCCCCAGCTGCAAGGAAAAGGTGGGTGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCTTTGCGTTGCCTGC
TTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTGCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGG
GATAGGCAAAGATTGGAGATGTGTGCATATGTACACTCGTGATAGAACCAAGGGACTTGAACTCTGATCCTTGATGGTACTGTCTGGTATCACACAAGTAAGCCGTGAAG
AACATCTTGGAGAAGATGATATACCTGAGTTCATTGGGGTGTTGCCCAGATGCAGATGAATCTAATTGGAATGCCGCGGTTTTGAATCTGGAAGCGAAGGTCCGGCATGA
GAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCAGGGGGTATGCCATGGCAGGATGTTCACTTCAAGACGATGGCAGCTTTACAGATCCCTTTCATGGAGTTG
CAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACACTCTCCATTCCCATGTTGAACATTACTTCCTTTCTTCCCGAGTAGAAAAAGAATTAAAGCCCCCTTGTGT
GCATTCCTTTTGAACCAAAAGGAGAATTTATGTATGTATGTGTGCTTGTGTGTGTGGATTGAAGTTTGGTTTTATATGTTAAAATTAGCGGCAGCTCCACAACAATATAC
TCTGCACTCTGCACTCTACACTCTAC
Protein sequenceShow/hide protein sequence
MSEDDKPVGKTAPNAIFDDPQGVPIQQTMFRDTPAPFYCVYCGISGLTTVRSKVSSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSN
WTQQSFALPA