CuGenDBv2

Gene ID	CmoCh08G000230
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Coiled-coil domain-containing protein SCD2
Genome location	Cmo_Chr08:123738..126499
RNA-Seq Expression	CmoCh08G000230
Synteny	CmoCh08G000230
Gene Ontology terms	GO:0000911 - cytokinesis by cell plate formation (biological process)
InterPro domains	IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7025230.1 hypothetical protein SDJN02_11725 [Cucurbita argyrosperma subsp. argyrosperma]

5.5e-125

88.24

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Query:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQ--------GVDPASETFQRIQMKYLEDDEGINKYFS
        RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNV FICNRRKLENKPPYLSQ        GVDPASETFQRIQMKYLEDDEGINKYFS
Subjt:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQ--------GVDPASETFQRIQMKYLEDDEGINKYFS

Query:  AFHLHRTLPVAVVIDDFGDFFEE-------------------RRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKR
        AFHLHRTLPVAVVIDDFGDFFEE                   RRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKR
Subjt:  AFHLHRTLPVAVVIDDFGDFFEE-------------------RRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKR

Query:  WVPTIFTIRGDGSGWFILRSINNCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
        WVPTIFTIRGDGSGWFILRSINNCGN+CCLRTKSAKYSI+LQFLSLEEVSEDITE
Subjt:  WVPTIFTIRGDGSGWFILRSINNCGNECCLRTKSAKYSIALQFLSLEEVSEDITE

XP_022959968.1 uncharacterized protein LOC111460863 isoform X1 [Cucurbita moschata]

5.9e-135

100

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Query:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
        MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
Subjt:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH

Query:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
        LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
Subjt:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN

Query:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
        NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE

XP_022959972.1 uncharacterized protein LOC111460863 isoform X2 [Cucurbita moschata]

1.1e-130

98.28

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Query:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
        MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
Subjt:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH

Query:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
        LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLA   +PCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
Subjt:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN

Query:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
        NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE

XP_023005109.1 uncharacterized protein LOC111498201 isoform X1 [Cucurbita maxima]

1.4e-128

97.81

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Query:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL
        RFFSVRQIQTQCD SHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLED+EGINKYFSAFHLHRTL
Subjt:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL

Query:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE
        PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLAL HNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGW ILRSINNCGN+
Subjt:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE

Query:  CCLRTKSAKYSIALQFLSLEEVSEDITE
        CCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  CCLRTKSAKYSIALQFLSLEEVSEDITE

XP_023514984.1 uncharacterized protein LOC111779141 [Cucurbita pepo subsp. pepo]

2.6e-127

97.81

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Query:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL
        RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL
Subjt:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL

Query:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE
        PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLA   +PCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGN+
Subjt:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE

Query:  CCLRTKSAKYSIALQFLSLEEVSEDITE
        CCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  CCLRTKSAKYSIALQFLSLEEVSEDITE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAT0 uncharacterized protein LOC103498887

2.1e-122

91.23

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Query:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL
        +FFSV+QI T+C+SSHSI LVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDP SETF+RIQMKYLEDD+GI KYFSAFHLH TL
Subjt:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL

Query:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE
        PVAVVIDDFGDFFEERRCQ KYANPRGRD+AMVRTLALCHNA+SLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDG+GWFILRSINNCGN+
Subjt:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE

Query:  CCLRTKSAKYSIALQFLSLEEVSEDITE
        CCLRTK AKYSIALQFLSLEE+SED  E
Subjt:  CCLRTKSAKYSIALQFLSLEEVSEDITE

A0A6J1H622 uncharacterized protein LOC111460863 isoform X2

5.5e-131

98.28

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Query:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
        MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
Subjt:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH

Query:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
        LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLA   +PCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
Subjt:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN

Query:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
        NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE

A0A6J1H6C8 uncharacterized protein LOC111460863 isoform X1

2.8e-135

100

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Query:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
        MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH
Subjt:  MERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFH

Query:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
        LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN
Subjt:  LHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSIN

Query:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
        NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  NCGNECCLRTKSAKYSIALQFLSLEEVSEDITE

A0A6J1KU11 uncharacterized protein LOC111498201 isoform X2

1.3e-124

96.05

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Query:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL
        RFFSVRQIQTQCD SHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLED+EGINKYFSAFHLHRTL
Subjt:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL

Query:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE
        PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLAL HNAMSLA   +PCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGW ILRSINNCGN+
Subjt:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE

Query:  CCLRTKSAKYSIALQFLSLEEVSEDITE
        CCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  CCLRTKSAKYSIALQFLSLEEVSEDITE

A0A6J1KWJ2 uncharacterized protein LOC111498201 isoform X1

6.8e-129

97.81

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Query:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL
        RFFSVRQIQTQCD SHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLED+EGINKYFSAFHLHRTL
Subjt:  RFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAFHLHRTL

Query:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE
        PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLAL HNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGW ILRSINNCGN+
Subjt:  PVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILRSINNCGNE

Query:  CCLRTKSAKYSIALQFLSLEEVSEDITE
        CCLRTKSAKYSIALQFLSLEEVSEDITE
Subjt:  CCLRTKSAKYSIALQFLSLEEVSEDITE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G23255.1 unknown protein

1.3e-63

53.22

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Query:  RFFSVRQIQTQCDSSH---SIMLVSGPPSCGKTSLLFQFAFNLGLEGNVT---FICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAF
        RFF  +  ++  D +H   ++ L+SGP S GKTSLLFQ A N+      T   FIC+R+K+E+ PP+LSQG+DP+S+ F RIQ+KY++DDEGI KYF+AF
Subjt:  RFFSVRQIQTQCDSSH---SIMLVSGPPSCGKTSLLFQFAFNLGLEGNVT---FICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAF

Query:  HLHRT--LPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILR
        HLH    LP AV+IDDFGD+F +        N R RD+AMVRTLALCHNA+  A +   C+LVLS+T+HG+SPR +FIYKRW+P IFTI+G G G F+L 
Subjt:  HLHRT--LPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILR

Query:  SINNCGNECCLRTKSAKYSIALQFLSLEEVSED
        S +          +SAKYSIALQ+L LE++ +D
Subjt:  SINNCGNECCLRTKSAKYSIALQFLSLEEVSED

AT3G23255.2 unknown protein

4.0e-65

53.65

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Query:  RFFSVRQIQTQCDSSH---SIMLVSGPPSCGKTSLLFQFAFNLGLEGNVT---FICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAF
        RFF  +  ++  D +H   ++ L+SGP S GKTSLLFQ A N+      T   FIC+R+K+E+ PP+LSQG+DP+S+ F RIQ+KY++DDEGI KYF+AF
Subjt:  RFFSVRQIQTQCDSSH---SIMLVSGPPSCGKTSLLFQFAFNLGLEGNVT---FICNRRKLENKPPYLSQGVDPASETFQRIQMKYLEDDEGINKYFSAF

Query:  HLHRT--LPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILR
        HLH    LP AV+IDDFGD+F +        N R RD+AMVRTLALCHNA+  AN+   C+LVLS+T+HG+SPR +FIYKRW+P IFTI+G G G F+L 
Subjt:  HLHRT--LPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSGWFILR

Query:  SINNCGNECCLRTKSAKYSIALQFLSLEEVSED
        S +          +SAKYSIALQ+L LE++ +D
Subjt:  SINNCGNECCLRTKSAKYSIALQFLSLEEVSED

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAATGTTGTGGTCCTTTTCTCCAAGACATGGGAATAGCAGTTGTCTTATCTTTTTGGATGGGGGCTGGGGAGGGGAATAGGATGGAAAGGTTCTTCCGGTTCTTCTC
GGTGCGGCAAATCCAAACTCAATGCGACTCTTCCCACTCAATCATGCTTGTTTCAGGGCCTCCTTCCTGCGGAAAGACTTCCTTGCTTTTTCAGTTTGCTTTTAATTTGG
GTTTGGAGGGAAATGTTACCTTCATCTGCAACCGCCGCAAATTAGAGAATAAACCTCCATATCTCTCGCAGGGAGTTGATCCAGCATCCGAAACCTTTCAGCGCATACAA
ATGAAGTATTTGGAGGACGACGAGGGAATTAACAAGTACTTCTCTGCATTTCACCTGCATCGTACACTTCCCGTGGCAGTTGTTATTGACGATTTTGGAGATTTTTTCGA
GGAAAGGCGATGTCAGGAAAAATATGCCAATCCTCGCGGAAGAGACCTAGCAATGGTTAGAACACTAGCACTTTGTCATAATGCCATGAGCCTAGCGAATCAGTGTAGGC
CTTGCCAGCTTGTGTTGTCTGATACCCACCACGGAGAGTCCCCAAGGTTGATATTCATTTATAAGAGATGGGTTCCAACCATTTTCACCATTAGAGGTGATGGGTCTGGA
TGGTTCATCCTGAGAAGTATTAACAATTGTGGAAATGAGTGTTGTTTGAGGACTAAAAGTGCAAAATACTCGATTGCTCTTCAGTTCCTGAGTTTGGAGGAAGTTTCTGA
AGACATTACAGAATAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKCCGPFLQDMGIAVVLSFWMGAGEGNRMERFFRFFSVRQIQTQCDSSHSIMLVSGPPSCGKTSLLFQFAFNLGLEGNVTFICNRRKLENKPPYLSQGVDPASETFQRIQ
MKYLEDDEGINKYFSAFHLHRTLPVAVVIDDFGDFFEERRCQEKYANPRGRDLAMVRTLALCHNAMSLANQCRPCQLVLSDTHHGESPRLIFIYKRWVPTIFTIRGDGSG
WFILRSINNCGNECCLRTKSAKYSIALQFLSLEEVSEDITE

CmoCh08G000230 (gene) of Cucurbita moschata (Rifu) v1 genome