CuGenDBv2

Gene ID	CmoCh08G000340
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	U2 small nuclear ribonucleoprotein A'
Genome location	Cmo_Chr08:174239..182306
RNA-Seq Expression	CmoCh08G000340
Synteny	CmoCh08G000340
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005737 - cytoplasm (cellular component) GO:0015030 - Cajal body (cellular component) GO:0005515 - protein binding (molecular function) GO:0030620 - U2 snRNA binding (molecular function)
InterPro domains	IPR001611 - Leucine-rich repeat IPR003603 - U2A'/phosphoprotein 32 family A, C-terminal IPR032675 - Leucine-rich repeat domain superfamily IPR044640 - U2 small nuclear ribonucleoprotein A'

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]

3.1e-133

92.28

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKTMSD GDEE+V       +NDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]

1.2e-140

95.44

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV+NTTKDTDD+TMSDG DE+NVSKD KEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]

1.7e-147

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]

5.0e-147

99.65

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKT+SDGGDEENVSKDAKEQSNDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]

9.1e-141

95.79

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FVPGEVENASKPVEEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APT EQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLL+DNTV NTTK+TDDKTMSD GDEENVSKD KEQSNDE TPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'

4.1e-131

91.23

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'

5.8e-141

95.44

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKL+SLRVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGEVENASKP EEKQTS +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTV+NTTKDTDD+TMSDG DE+NVSKD KEQ NDES PMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'

8.3e-148

100

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'

2.4e-147

99.65

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKT+SDGGDEENVSKDAKEQSNDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

E5GB46 U2 small nuclear ribonucleoprotein a

4.1e-131

91.23

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLP LHTLVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLASL KLQFLSLLDNNITKKPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GEVE ASKPVEEKQT  +S
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ
        APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNT  N TKD DDKT S  GDEE+V       +NDESTPMEQ
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQ

SwissProt top hits

e value

%identity

Alignment

P09661 U2 small nuclear ribonucleoprotein A'

3.9e-54

50.57

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTST
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTST

Query:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVTN
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P               +E++TVTN
Subjt:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVTN

P43333 U2 small nuclear ribonucleoprotein A'

3.8e-97

79.5

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKL+SLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +T  + 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'

1.1e-53

50.57

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTST
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTST

Query:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVTN
           P+   + AIK AI N+ TL EV RL+  L+SGQ+P               +ED+TVTN
Subjt:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVTN

Q4R8Y8 U2 small nuclear ribonucleoprotein A'

3.9e-54

50.57

Show/hide

Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT +LI ++  + NA+++RELDLRG KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI RI   + + LP L  L+LTNN L
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTST
        V L ++DPLASL  L +LS+L N +T K +YRLYVI+K+  +RVLDF+KV+ KER EA  +F  K   + AK      KTF PG    A  P ++K+   
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGEVENASKPVEEKQTST

Query:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVTN
           P+P  + AIK AI N+ TL EV RL+  L+SGQ+P               +E++TVTN
Subjt:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPA----------DLNLLEDNTVTN

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'

3.3e-45

45.38

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MVRLT +L  + P F N++  RE++LRG KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI  I P+I   LP L TL LTNN +
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVENASKPVEEKQTST
          L +I+PLA   KL++++ + N IT K NYR+Y+I+KL ++RV+DF +VR  ER  A+ +F  K  ++  +A ++SV T  P E+E       E  +  
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGEVENASKPVEEKQTST

Query:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP
         +  T E    IK AI N+++L EV  L+  L SG++P
Subjt:  MSAPTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLP

Arabidopsis top hits

e value

%identity

Alignment

AT1G04210.1 Leucine-rich repeat protein kinase family protein

8.6e-04

38.37

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Query:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY
        +DLS N+I  L N + YL+ L  L + +NR+  ++P +   L  L +L ++NNRL  L  +D L  +P+LQ L+L  N   K P+Y
Subjt:  IDLSDNEIVKLEN-MPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITKKPNY

AT1G09760.1 U2 small nuclear ribonucleoprotein A

2.7e-98

79.5

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Query:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL
        MV+LT DLIWKSPHFFNAIKERELDLRGNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRITRINPN+GEFLPKLH+LVLTNNRL
Subjt:  MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRL

Query:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS
        VNLVEIDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKL+SLRVLDF K++ KER EA +LFSSKE EEE KK S +     EV+  S+  E  +T  + 
Subjt:  VNLVEIDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMS

Query:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        APT EQI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  APTPEQIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

Sequences

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CDS sequence

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ATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTCGAGGAAACAAGATAGCAGTTATAGAAAACCT
AGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTTAATCGATTGGGCACATTGCTGATCAATAATA
ATAGAATCACTCGTATTAATCCAAATATTGGAGAGTTCTTGCCAAAATTACACACGTTAGTTCTTACGAACAACAGACTTGTGAACTTGGTAGAGATTGACCCGTTGGCG
TCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTCACAAGTTAAGGTCACTCCGGGTGCTTGATTT
CAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAGGAATCTGTGAAGACTTTTGTTCCAGGTGAGG
TAGAGAATGCTTCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTATTAAGGCGGCCATTGTTAATTCCCAAACTCTT
GAAGAGGTTGCAAGATTGGAACAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTGTGACAAATACCACAAAAGATACAGACGATAA
GACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATGGAGCAGCTTTCATCGATTGGTGATCCTGTTG
GGCTGATTTGTGGACATTTTAAAGAACTTTTGAGAAGTCCAAGCATGTCCCATCTTAGCCTGGGGACGTTAGACCTCTACTTCACCTCTTTTTTAGGAGTTGGTTCTTTT
TCTCCCTTCTAG

mRNA sequence

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AACGTCGAGTCTTCTTTCGATCCACGCTGCGCTGCCTTTGATGTCGCTTGTCGCCGACGCGTTCCCTTCACTCACACTCGCCCTAAAGCCCTAAACCCCCGTCGTCGTCG
TCGTCGTCCAGTGAACTAAACTCAGAAGAACATGGTGAGACTCACAGTCGATTTAATCTGGAAAAGCCCTCATTTCTTCAATGCCATTAAGGAGCGAGAACTGGACCTTC
GAGGAAACAAGATAGCAGTTATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTAAAGCTGGAAAATATGCCATATCTT
AATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCGTATTAATCCAAATATTGGAGAGTTCTTGCCAAAATTACACACGTTAGTTCTTACGAACAACAGACT
TGTGAACTTGGTAGAGATTGACCCGTTGGCGTCCCTTCCAAAACTTCAGTTTCTTAGTTTGTTAGACAACAATATTACGAAGAAGCCAAACTATAGATTGTATGTCATTC
ACAAGTTAAGGTCACTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAAGGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAAAAG
GAATCTGTGAAGACTTTTGTTCCAGGTGAGGTAGAGAATGCTTCCAAACCTGTGGAGGAGAAACAAACTTCAACCATGTCTGCACCAACACCGGAGCAAATTATAGCTAT
TAAGGCGGCCATTGTTAATTCCCAAACTCTTGAAGAGGTTGCAAGATTGGAACAGGCACTAAAGTCAGGTCAGCTACCTGCAGATTTGAATCTTTTGGAAGATAATACTG
TGACAAATACCACAAAAGATACAGACGATAAGACAATGTCTGATGGTGGAGATGAAGAAAATGTATCCAAGGATGCAAAAGAACAATCGAATGATGAATCTACACCTATG
GAGCAGCTTTCATCGATTGGTGATCCTGTTGGGCTGATTTGTGGACATTTTAAAGAACTTTTGAGAAGTCCAAGCATGTCCCATCTTAGCCTGGGGACGTTAGACCTCTA
CTTCACCTCTTTTTTAGGAGTTGGTTCTTTTTCTCCCTTCTAG

Protein sequence

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MVRLTVDLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLA
SLPKLQFLSLLDNNITKKPNYRLYVIHKLRSLRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGEVENASKPVEEKQTSTMSAPTPEQIIAIKAAIVNSQTL
EEVARLEQALKSGQLPADLNLLEDNTVTNTTKDTDDKTMSDGGDEENVSKDAKEQSNDESTPMEQLSSIGDPVGLICGHFKELLRSPSMSHLSLGTLDLYFTSFLGVGSF
SPF

CmoCh08G000340 (gene) of Cucurbita moschata (Rifu) v1 genome