; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G000680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G000680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome locationCmo_Chr08:380123..382492
RNA-Seq ExpressionCmoCh08G000680
SyntenyCmoCh08G000680
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsIPR040003 - Plastoglobular protein 18-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592865.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.6e-8398.86Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ L
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNP SDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
XP_022960100.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]1.9e-84100Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
XP_023005089.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]3.6e-8096Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
        MTSGVTPSVSPSHFSILHSKPKITH SSPSNLKFRPISPIGSPRFVVRCSSGD DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ L
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        DFQEEV+ERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST+STNQQQLSNP SDSGTAPNQDPPLG EE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
XP_023514675.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]1.6e-8398.86Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ L
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        DFQEEV+ERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]1.0e-5873.54Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS
        M+SGVT SVS S FS++ +KPKITH+SS           PSNLKFR IS   P GSPRF+ RCSSGDGDSRTVL+AFFLGKALAEALTER+EST+GEVLS
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS

Query:  GIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        GIGRLQAEQQKQ  DFQEEV+ERAKKA++KAARDAKEVQGP+  SSSI SPTIEV SS T STN+QQLSNP  DS T  NQDPPLG +E
Subjt:  GIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
TrEMBL top hitse value%identityAlignment
A0A0A0K6Q2 Uncharacterized protein1.4e-4867.2Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHF-----------SSPSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS
        M+SGVT SVS S FS++ +KPKITH+           S+PSNLKFR IS   P G  RF+ RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVLS
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHF-----------SSPSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS

Query:  GIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLG
        GIGRLQAEQQKQ  DFQ+EV+ERAKKA+EKAARD+KEVQGP+  SSS+ SP IEV SS TS       S+P +DS +  NQDP LG
Subjt:  GIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLG
A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X12.0e-4765.59Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS
        M+S +T SVS S FS++ +KPKITH+SS           PSNL+FR IS   P GS R + RCSSGDGDSRT+L+AFFLGKALAEALTER+ESTIGEVLS
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLS

Query:  GIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLG
        GIG+LQAEQQKQ  DFQ+EV+ERAKKA+EKAAR+AKEVQ P+  SSS+ SPTIEV+SS TS       S+P +DS +  NQDPPLG
Subjt:  GIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLG
A0A6J1H854 uncharacterized protein At4g13200, chloroplastic-like9.0e-85100Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
        MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like3.3e-4766.12Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPIS--------PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQ
        M+SGV  SVSPS FS+L ++ KITH SSPS ++FR  S        P GS RF+  CSSGDGD+RTVL+AFFLGKA AE LTERVEST+GEVLS IGRLQ
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPIS--------PIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQ

Query:  AEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        AE+Q+Q +DFQEEV+ERAKKA+EKA RDAKE QGPI  SSSI S TIEV SS T S+N QQ S+  + S T  NQDPP G EE
Subjt:  AEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like1.7e-8096Show/hide
Query:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL
        MTSGVTPSVSPSHFSILHSKPKITH SSPSNLKFRPISPIGSPRFVVRCSSGD DSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQ L
Subjt:  MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFL

Query:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
        DFQEEV+ERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSST+STNQQQLSNP SDSGTAPNQDPPLG EE
Subjt:  DFQEEVLERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE
SwissProt top hitse value%identityAlignment
P73628 Thylakoid protein sll17696.8e-0540.28Show/hide
Query:  VLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISS
        VL AFFLG+A AE L+E+VE  +   LS +G+  AEQ++    F  EV  RA     +       V GP+S+
Subjt:  VLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISS
Q8LDV3 Uncharacterized protein At4g13200, chloroplastic1.7e-1942.7Show/hide
Query:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE
        SPS FS+ +S  + +  S     S SN +F  +     S   S      CS     SG+ ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAE
Subjt:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE

Query:  QQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPGSDSGTAPNQD
        QQKQ  + QEEVLERAKKA+E+AAR+  E QG ++S   +  R+P   V +S  STS+   + +     +S ++ ++D
Subjt:  QQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPGSDSGTAPNQD
Arabidopsis top hitse value%identityAlignment
AT4G13200.1 unknown protein1.2e-2042.7Show/hide
Query:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE
        SPS FS+ +S  + +  S     S SN +F  +     S   S      CS     SG+ ++++VL+AFFLGKALAE + ER+EST+GEVLS IG+ QAE
Subjt:  SPSHFSILHSKPKITHFS-----SPSNLKFRPI-----SPIGSPRFVVRCS-----SGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAE

Query:  QQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPGSDSGTAPNQD
        QQKQ  + QEEVLERAKKA+E+AAR+  E QG ++S   +  R+P   V +S  STS+   + +     +S ++ ++D
Subjt:  QQKQFLDFQEEVLERAKKAQEKAARDAKEVQGPISSS--SSIRSPTIEVASS--STSSTNQQQLSNPGSDSGTAPNQD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGTGGGGTTACACCTTCAGTTTCCCCCTCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGAT
TTCACCAATTGGGTCTCCCAGATTCGTAGTCCGTTGCAGCTCTGGTGATGGCGACAGCAGGACTGTTCTTAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAA
CCGAGCGCGTTGAGTCAACAATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAATTTCTTGATTTCCAGGAGGAGGTTTTAGAAAGAGCC
AAAAAAGCCCAGGAAAAAGCAGCACGTGATGCCAAGGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCGACTAG
TTCGACCAACCAACAACAACTCTCGAATCCCGGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGTGGCGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
AAGCTGGTATTGGACAATCCAGAGTGAGCCACGTTGTGCTTGCCTTCTTGTCAAGAATCAGGGGGCGTTTCCGGGTTGCTGACATCATACAGTCCAAGCCCCAAAATCTT
TCTTTATATATTCCTGTTTGGCTGTCAAGAAAACGAGCGAGAAACGCTGAGAAAGTGACGCCACGCATTTTTCAGTTCCCGTCGCCCAGAAATGACTAGTGGGGTTACAC
CTTCAGTTTCCCCCTCCCATTTCTCAATTCTTCACTCTAAACCAAAGATTACCCACTTTTCATCTCCTTCAAATCTCAAATTTCGACCGATTTCACCAATTGGGTCTCCC
AGATTCGTAGTCCGTTGCAGCTCTGGTGATGGCGACAGCAGGACTGTTCTTAATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACCGAGCGCGTTGAGTCAAC
AATTGGAGAAGTTTTGAGTGGGATTGGTAGGCTGCAAGCTGAACAACAAAAACAATTTCTTGATTTCCAGGAGGAGGTTTTAGAAAGAGCCAAAAAAGCCCAGGAAAAAG
CAGCACGTGATGCCAAGGAAGTACAAGGCCCGATCTCTTCTTCTTCTTCGATAAGATCGCCTACGATCGAGGTTGCTTCATCTTCGACTAGTTCGACCAACCAACAACAA
CTCTCGAATCCCGGCTCTGATTCAGGAACTGCTCCGAACCAGGATCCTCCTCTTGGTGGCGAAGAGTAATTAATTGTGTCTTTGTCAATTTCTCTTGGTTGTTATATATA
GAAGACTTATATAGTGAATGTAACCTTTATATACTGATGATGGGTTGGGTTGGTTATTTAGTCTCAAAGTCGTATAGTAATTATTGCCTTCTTAAGGTTCGTCTTTCAGA
TATCTTATGAGATTCTTGACGTGATCGAACACTACCCGTTTGGTAACATTATTATTTGAAATTTTGAATATAGGAACGAGTTAAAAACGACTGTTATAGTCAATTTTATA
TGCCTA
Protein sequenceShow/hide protein sequence
MTSGVTPSVSPSHFSILHSKPKITHFSSPSNLKFRPISPIGSPRFVVRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQFLDFQEEVLERA
KKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPNQDPPLGGEE