; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G001020 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G001020
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor IBH1
Genome locationCmo_Chr08:539481..539936
RNA-Seq ExpressionCmoCh08G001020
SyntenyCmoCh08G001020
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]9.8e-4270.39Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY
        MAS+SG TP+ S+SS+LRLARTFLRSF+ IKS+ P    S    ELRRRSRRIK+ AYSSMAR AGP+ AWARALLFKL TRARHRTL+ RRR       
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY

Query:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLSTN
        SDD VGKLRRL+PGG+ MDVCTLLEET +YI CLSAQVKVM AI  H  STN
Subjt:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLSTN

KAG6592893.1 hypothetical protein SDJN03_12369, partial [Cucurbita argyrosperma subsp. sororia]8.0e-4496.23Show/hide
Query:  MNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSDDHVGKLR
        MNSSSSSLRLARTFLRSFS+IKSRRPTT ASRSAFELRRRSRRIKIAAYSSMAR AGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY DDHVGKLR
Subjt:  MNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSDDHVGKLR

Query:  RLLPGG
        RLLPGG
Subjt:  RLLPGG

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-7097.35Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY
        MASESGTTPMNSSSSSLRLARTFLRSFS+IKSRRPTT ASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARH TLMRRRRSTMPSAY
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY

Query:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
         DDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
Subjt:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]2.0e-4270.47Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD
        S+S  T +NS+SS  R ARTFLR FS+IKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RHRTLMRR+R   PS   D
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]1.1e-6693.38Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY
        MA ESG TPMNSSSSSLRLARTFLRSFS+IKSRRPTT ASRSAFELRRRSRRIKIAAYSSMARVAGPQR WARALLFKLNTRARHRT MRRR STMPSAY
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY

Query:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
         DDHVGKLRRL+PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS N
Subjt:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein3.3e-3564.86Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD
        S+S  T +NS+SS L  ART              T AS    +L+R+SRRIK+AAYSSMARVAG +RAWARALLF+L+TR RH+TLMRR+R   PS  SD
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLS
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+ HHLS
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLS

A0A1S3CLD3 transcription factor IBH19.6e-4370.47Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD
        S+S  T +NS+SS  R ARTFLR FS+IKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RHRTLMRR+R   PS   D
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

A0A2N9I4P0 Uncharacterized protein9.6e-2752.35Show/hide
Query:  MNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRS---TMPSAYSDDHVG
        +N++S  ++ AR F+R+ SK+K   P   +S S  E+R+RS+RIKIAAYSSMA   G ++AW+RA+LFKL  RARH+ +M RRRS       A  +D  G
Subjt:  MNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRS---TMPSAYSDDHVG

Query:  ------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
              KLR+L+PGG  MD+C+LLEETA YI CLS QVKVM  IA H S
Subjt:  ------KLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

A0A5D3BPL2 Transcription factor IBH19.6e-4370.47Show/hide
Query:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD
        S+S  T +NS+SS  R ARTFLR FS+IKS+R  T AS    +L+R+S+RIK+ AYSSMARVAGP+RAWARALLFKL TR RHRTLMRR+R   PS   D
Subjt:  SESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSD

Query:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST
        D VGKLRRLLPGG+ MDVCTLLEETA+YIHCLS QVKVM AI+  HLST
Subjt:  DHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIA-HHLST

A0A6J1KS83 transcription factor IBH15.6e-6793.38Show/hide
Query:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY
        MA ESG TPMNSSSSSLRLARTFLRSFS+IKSRRPTT ASRSAFELRRRSRRIKIAAYSSMARVAGPQR WARALLFKLNTRARHRT MRRR STMPSAY
Subjt:  MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAY

Query:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN
         DDHVGKLRRL+PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS N
Subjt:  SDDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH13.4e-1339.88Show/hide
Query:  LARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTM----PSAYS--------
        LA  FLR+ S+I    P T          RR+R I+ AAYSSMAR A P+RAW+RALL +   R R RTLMRR     RR  +    PS  S        
Subjt:  LARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTM----PSAYS--------

Query:  --------------------DDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI
                                  LRRL+PGG GM+  +LLEETADY+  L AQV++M  +
Subjt:  --------------------DDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI

Q7XR02 Transcription factor IBH12.6e-1339.88Show/hide
Query:  LARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTM----PSAYS--------
        LA  FLR+ S+I    P T          RR+R I+ AAYSSMAR A P+RAW+RALL ++  R R RTLMRR     RR  +    PS  S        
Subjt:  LARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRR-----RRSTM----PSAYS--------

Query:  --------------------DDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI
                                  LRRL+PGG GM+  +LLEETADY+  L AQV++M  +
Subjt:  --------------------DDHVGKLRRLLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAI

Q9SKX1 Transcription factor IBH11.4e-1440.15Show/hide
Query:  FLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMPSAYSDDHVGKLRRLL
        FL+S S ++ + P  T  +  +    R R+IK AAY SMAR A G  R W+RALL + +         +R + +   +RRRS   +   ++   +LR L+
Subjt:  FLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMPSAYSDDHVGKLRRLL

Query:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
        PGG GM+   L+EETA YI CLS QVKVM  +   LS
Subjt:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 19.8e-1640.15Show/hide
Query:  FLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMPSAYSDDHVGKLRRLL
        FL+S S ++ + P  T  +  +    R R+IK AAY SMAR A G  R W+RALL + +         +R + +   +RRRS   +   ++   +LR L+
Subjt:  FLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVA-GPQRAWARALLFKLN---------TRARHRTLMRRRRSTMPSAYSDDHVGKLRRLL

Query:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS
        PGG GM+   L+EETA YI CLS QVKVM  +   LS
Subjt:  PGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTGAATCCGGTACAACCCCGATGAATTCCTCCTCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAAGATCAAATCCCGAAGACCCACCAC
CACTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGTGGCTGGGCCACAACGAGCATGGGCTAGAG
CCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACTCTGACGACCATGTCGGGAAGCTCCGCCGC
TTACTTCCGGGCGGCGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGAATGCCATAGCTCATCA
TTTATCAACAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCTGAATCCGGTACAACCCCGATGAATTCCTCCTCTTCTTCCCTCCGCCTAGCTCGAACCTTCCTCCGATCCTTCTCCAAGATCAAATCCCGAAGACCCACCAC
CACTGCCTCTCGGTCCGCTTTCGAGCTTAGACGCCGGAGTCGACGGATAAAAATCGCAGCCTACTCCTCCATGGCACGCGTGGCTGGGCCACAACGAGCATGGGCTAGAG
CCCTCCTCTTCAAGCTCAATACTCGAGCTAGACATAGGACTTTGATGAGACGCCGCCGTTCAACGATGCCCTCGGCCTACTCTGACGACCATGTCGGGAAGCTCCGCCGC
TTACTTCCGGGCGGCGACGGAATGGACGTGTGCACCTTGCTGGAGGAAACTGCCGACTACATCCATTGCCTCTCCGCGCAGGTTAAGGTCATGAATGCCATAGCTCATCA
TTTATCAACAAATTGA
Protein sequenceShow/hide protein sequence
MASESGTTPMNSSSSSLRLARTFLRSFSKIKSRRPTTTASRSAFELRRRSRRIKIAAYSSMARVAGPQRAWARALLFKLNTRARHRTLMRRRRSTMPSAYSDDHVGKLRR
LLPGGDGMDVCTLLEETADYIHCLSAQVKVMNAIAHHLSTN