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CmoCh08G001050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G001050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein PRD1
Genome locationCmo_Chr08:557846..558702
RNA-Seq ExpressionCmoCh08G001050
SyntenyCmoCh08G001050
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
InterPro domainsIPR044968 - Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592895.1 Protein putative RECOMBINATION INITIATION DEFECT 1, partial [Cucurbita argyrosperma subsp. sororia]1.7e-6396.85Show/hide
Query:  MATYHRFAFTHRKEEVGTICLLCFSNLISDPLSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNF
        MAT+HRFAFTHRKEEVGTICLLCFSNLISDP SSSSLGLFSQLPLL TFLTFHSHFIVPSFIAVLFSYDDDPIACQVT LVHKLCDVTEADGDGSICDNF
Subjt:  MATYHRFAFTHRKEEVGTICLLCFSNLISDPLSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNF

Query:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
        IAGVLDRLSYAVLAWSPRQVYMVPNVR
Subjt:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
KAG7025297.1 Protein PRD1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-6396.85Show/hide
Query:  MATYHRFAFTHRKEEVGTICLLCFSNLISDPLSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNF
        MAT+HRFAFTHRKEEVGTICLLCFSNLISDP SSSSLGLFSQLPLL TFLTFHSHFIVPSFIAVLFSYDDDPIACQVT LVHKLCDVTEADGDGSICDNF
Subjt:  MATYHRFAFTHRKEEVGTICLLCFSNLISDPLSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNF

Query:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
        IAGVLDRLSYAVLAWSPRQVYMVPNVR
Subjt:  IAGVLDRLSYAVLAWSPRQVYMVPNVR
XP_022992066.1 protein PRD1 [Cucurbita maxima]1.9e-3061.34Show/hide
Query:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDPLS         S      SQ P L TFL+FHSHF+V  F+  L S+DDDP+A Q+TDLV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV
XP_023547735.1 protein PRD1 [Cucurbita pepo subsp. pepo]1.9e-3061.34Show/hide
Query:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDPLS         S      SQ P L TFL+FHSHF+V  F+  L S+DDDP+A Q+TDLV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV
XP_038884337.1 LOW QUALITY PROTEIN: protein PUTATIVE RECOMBINATION INITIATION DEFECT 1-like [Benincasa hispida]4.5e-3263.28Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDPLS     S +L  FSQ     P L TFLTFHSH IV  F+A L S+DDD IA QVTDLV  LCD+TE DGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        +CD+FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
TrEMBL top hitse value%identityAlignment
A0A6J1D8C7 protein PRD1 isoform X11.7e-2959.38Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDPLS     S +L   SQ     P L TFLTFHSHFIV  F+A L  +DD+PIA Q+TDLV +LCD + ADGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        + ++FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
A0A6J1DAL8 protein PRD1 isoform X31.7e-2959.38Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDPLS     S +L   SQ     P L TFLTFHSHFIV  F+A L  +DD+PIA Q+TDLV +LCD + ADGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        + ++FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
A0A6J1DBD4 protein PRD1 isoform X21.7e-2959.38Show/hide
Query:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS
        HR +     +E GTICLLCFSNLISDPLS     S +L   SQ     P L TFLTFHSHFIV  F+A L  +DD+PIA Q+TDLV +LCD + ADGDGS
Subjt:  HRFAFTHRKEEVGTICLLCFSNLISDPLS-----SSSLGLFSQL----PLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGS

Query:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
        + ++FIA V DRLS   LAWS RQVYM+
Subjt:  ICDNFIAGVLDRLSYAVLAWSPRQVYMV
A0A6J1ET85 protein PRD16.0e-3060.5Show/hide
Query:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDPLS         S      SQ P L TFL+FHSHF+V  F+  L S+DD P+A Q+TDLV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV
A0A6J1JSI6 protein PRD19.2e-3161.34Show/hide
Query:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV
        +E G+ICLLCFSNLISDPLS         S      SQ P L TFL+FHSHF+V  F+  L S+DDDP+A Q+TDLV +LCDV+EADGDGS+CD+F+A V
Subjt:  EEVGTICLLCFSNLISDPLS---------SSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGV

Query:  LDRLSYAVLAWSPRQVYMV
         DRLS   LAWS RQVYM+
Subjt:  LDRLSYAVLAWSPRQVYMV
SwissProt top hitse value%identityAlignment
O23277 Protein PUTATIVE RECOMBINATION INITIATION DEFECT 12.1e-1638.64Show/hide
Query:  ATYHRFAFTHRKEEVGTICLLCFSNLISDP----------LSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEAD
        A  HR   + R ++ GT CL+CFSNL+SDP          L   S+ + S+   L T L+ H HF+V   +  L S DD PIA Q+ D++  LC V E+ 
Subjt:  ATYHRFAFTHRKEEVGTICLLCFSNLISDP----------LSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEAD

Query:  GDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
           SI ++F+  + D+LS   L WS RQ++M+
Subjt:  GDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
Arabidopsis top hitse value%identityAlignment
AT4G14180.1 putative recombination initiation defect 11.5e-1738.64Show/hide
Query:  ATYHRFAFTHRKEEVGTICLLCFSNLISDP----------LSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEAD
        A  HR   + R ++ GT CL+CFSNL+SDP          L   S+ + S+   L T L+ H HF+V   +  L S DD PIA Q+ D++  LC V E+ 
Subjt:  ATYHRFAFTHRKEEVGTICLLCFSNLISDP----------LSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEAD

Query:  GDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV
           SI ++F+  + D+LS   L WS RQ++M+
Subjt:  GDGSICDNFIAGVLDRLSYAVLAWSPRQVYMV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCTATCATCGCTTTGCCTTCACACACAGGAAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTTTCCAACCTCATCTCCGATCCCCTCTCTTCCAGTTCTCT
CGGGCTTTTTTCTCAGCTTCCATTACTCCCCACCTTCCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTG
CTTGCCAAGTCACCGATCTTGTTCACAAGCTCTGTGATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTAT
GCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATGGTACCAAATGTACGATAA
mRNA sequenceShow/hide mRNA sequence
GCGAGGGAAACATCCAGACCGCGAATCAGCACAGGAAGAACAGGATCGATCCATTCTTCCATGATCATGCTTCCATGGCGACCTATCATCGCTTTGCCTTCACACACAGG
AAGGAGGAAGTAGGAACGATTTGCCTTCTCTGCTTTTCCAACCTCATCTCCGATCCCCTCTCTTCCAGTTCTCTCGGGCTTTTTTCTCAGCTTCCATTACTCCCCACCTT
CCTCACTTTCCACTCTCACTTTATCGTCCCTTCCTTCATCGCCGTGCTCTTCTCCTACGACGATGATCCCATTGCTTGCCAAGTCACCGATCTTGTTCACAAGCTCTGTG
ATGTGACTGAAGCTGACGGTGATGGATCCATTTGCGATAATTTCATTGCCGGAGTTTTGGATCGGCTTTCTTATGCCGTGTTGGCGTGGAGTCCTCGCCAAGTGTATATG
GTACCAAATGTACGATAA
Protein sequenceShow/hide protein sequence
MATYHRFAFTHRKEEVGTICLLCFSNLISDPLSSSSLGLFSQLPLLPTFLTFHSHFIVPSFIAVLFSYDDDPIACQVTDLVHKLCDVTEADGDGSICDNFIAGVLDRLSY
AVLAWSPRQVYMVPNVR