CuGenDBv2

Gene ID	CmoCh08G001120
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	F-box domain-containing protein
Genome location	Cmo_Chr08:579407..580087
RNA-Seq Expression	CmoCh08G001120
Synteny	CmoCh08G001120
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR036047 - F-box-like domain superfamily IPR044207 - F-box protein At5g39250-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022959961.1 F-box protein At5g39250 [Cucurbita moschata]

7.6e-131

100

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
        MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN

Query:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
        VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
Subjt:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF

Query:  GIVMDFCDAANTKDEVLWLLDLLDWK
        GIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  GIVMDFCDAANTKDEVLWLLDLLDWK

XP_023005069.1 F-box protein At5g39250-like [Cucurbita maxima]

2.9e-130

99.56

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
        M VCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN

Query:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
        VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
Subjt:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF

Query:  GIVMDFCDAANTKDEVLWLLDLLDWK
        GIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  GIVMDFCDAANTKDEVLWLLDLLDWK

XP_023513418.1 F-box protein At5g39250-like [Cucurbita pepo subsp. pepo]

6.4e-130

99.56

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
        MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN

Query:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
        VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVA IVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
Subjt:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF

Query:  GIVMDFCDAANTKDEVLWLLDLLDWK
        GIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  GIVMDFCDAANTKDEVLWLLDLLDWK

XP_038883374.1 F-box protein At5g39250 isoform X1 [Benincasa hispida]

6.7e-119

89.87

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS
        M VCKQWRDIA+DD+FWKCLCAK+WPSTCK P+PPT+TYY+LY+NFYKRPNNRRLLPPRLSFD LEFFIDIWSEDRLIFSEVV+GQVLQ+GMK PPPGT 
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV
        NV++YHLE PEFKMTLPV+PRFSIPISH+VSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG+IDV
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV

Query:  FGIVMDFCDAANTKDEVLWLLDLLDWK
        FGIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  FGIVMDFCDAANTKDEVLWLLDLLDWK

XP_038883395.1 F-box protein At5g39250 isoform X2 [Benincasa hispida]

6.7e-119

89.87

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS
        M VCKQWRDIA+DD+FWKCLCAK+WPSTCK P+PPT+TYY+LY+NFYKRPNNRRLLPPRLSFD LEFFIDIWSEDRLIFSEVV+GQVLQ+GMK PPPGT 
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV
        NV++YHLE PEFKMTLPV+PRFSIPISH+VSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG+IDV
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV

Query:  FGIVMDFCDAANTKDEVLWLLDLLDWK
        FGIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  FGIVMDFCDAANTKDEVLWLLDLLDWK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L6S1 F-box domain-containing protein

1.8e-114

86.78

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS
        M VCKQWRDIA+DD+FWKCLCAKKWPSTCK   PPT+TYYKLY+NFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVV+G + Q+GMK PPP T 
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV
        N+++YHLE PEFKMTL V+PRFSIPIS+TVS SVLVGRKDSNKVARIVNKSVFDYIDRTSYR LAFDYLDFSP +PFVSGIRAWISLLF+DDG+DG IDV
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV

Query:  FGIVMDFCDAANTKDEVLWLLDLLDWK
        FGIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  FGIVMDFCDAANTKDEVLWLLDLLDWK

A0A1S3BL55 F-box protein At5g39250

3.6e-118

89.43

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS
        M VCKQWRDIARDD+FWKCLCAKKWPSTCK   PPT+TYYKLY+NFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSE V+G++LQ+GMK PPPGTS
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV
        NV++YHLE PEFKMTLPV+PRFSIPIS+ VS SVLVGRKDSNKVARIVNKSVFDYIDRTSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG IDV
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV

Query:  FGIVMDFCDAANTKDEVLWLLDLLDWK
        FGIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  FGIVMDFCDAANTKDEVLWLLDLLDWK

A0A5A7TI25 F-box protein

3.6e-118

89.43

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS
        M VCKQWRDIARDD+FWKCLCAKKWPSTCK   PPT+TYYKLY+NFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSE V+G++LQ+GMK PPPGTS
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMK-PPPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV
        NV++YHLE PEFKMTLPV+PRFSIPIS+ VS SVLVGRKDSNKVARIVNKSVFDYIDRTSYR LAFDYLDFSPL+PFVSGIRAWISLLF+DDGNDG IDV
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDV

Query:  FGIVMDFCDAANTKDEVLWLLDLLDWK
        FGIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  FGIVMDFCDAANTKDEVLWLLDLLDWK

A0A6J1H6B9 F-box protein At5g39250

3.7e-131

100

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
        MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN

Query:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
        VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
Subjt:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF

Query:  GIVMDFCDAANTKDEVLWLLDLLDWK
        GIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  GIVMDFCDAANTKDEVLWLLDLLDWK

A0A6J1KTX3 F-box protein At5g39250-like

1.4e-130

99.56

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
        M VCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSN

Query:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
        VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF
Subjt:  VINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVF

Query:  GIVMDFCDAANTKDEVLWLLDLLDWK
        GIVMDFCDAANTKDEVLWLLDLLDWK
Subjt:  GIVMDFCDAANTKDEVLWLLDLLDWK

SwissProt top hits

e value

%identity

Alignment

Q9FL82 F-box protein At5g39250

1.2e-89

66.96

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKP-PPGTS
        M VCKQWRDIARDDF+WKC CAKKWPS CK   PPT TYYK+YQ F KR  NR L PPRLSF++LEFFIDIWSE+RL+FS ++ G  L++G++  P G S
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKP-PPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFL---DDGNDGI
        NV+  HL  P++KM +P +PRF+IP++ +VSVSVLV R DS+KVARI+N+SVFDYIDR+SYR LAF+YLD SP YPF+SGIRAWISLLF+   D  +DG+
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFL---DDGNDGI

Query:  IDVFGIVMDFCDAANTKDEVLWLLDLLDWK
        +DVFGI +DF D A+TK+EVLWLLD+LDWK
Subjt:  IDVFGIVMDFCDAANTKDEVLWLLDLLDWK

Arabidopsis top hits

e value

%identity

Alignment

AT5G39250.1 F-box family protein

8.2e-91

66.96

Show/hide

Query:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKP-PPGTS
        M VCKQWRDIARDDF+WKC CAKKWPS CK   PPT TYYK+YQ F KR  NR L PPRLSF++LEFFIDIWSE+RL+FS ++ G  L++G++  P G S
Subjt:  MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKP-PPGTS

Query:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFL---DDGNDGI
        NV+  HL  P++KM +P +PRF+IP++ +VSVSVLV R DS+KVARI+N+SVFDYIDR+SYR LAF+YLD SP YPF+SGIRAWISLLF+   D  +DG+
Subjt:  NVINYHLEAPEFKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFL---DDGNDGI

Query:  IDVFGIVMDFCDAANTKDEVLWLLDLLDWK
        +DVFGI +DF D A+TK+EVLWLLD+LDWK
Subjt:  IDVFGIVMDFCDAANTKDEVLWLLDLLDWK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTAGTGTGCAAGCAGTGGAGAGACATAGCTCGAGATGATTTCTTTTGGAAATGTTTGTGCGCCAAGAAGTGGCCTTCAACCTGCAAAAATCCCGATCCTCCGACCAA
TACCTACTATAAATTATATCAAAACTTTTACAAACGTCCCAATAATCGACGTCTTCTCCCTCCTCGACTTTCCTTTGATGATCTAGAGTTTTTTATTGACATTTGGAGTG
AAGACAGGTTAATCTTCTCAGAAGTAGTTGCAGGTCAAGTCCTCCAGAGTGGTATGAAGCCACCACCTGGTACTAGTAATGTGATTAATTATCACCTAGAAGCCCCAGAG
TTCAAGATGACACTACCTGTTCAGCCAAGGTTCTCAATTCCTATATCCCATACTGTGAGCGTATCTGTGCTTGTAGGACGCAAGGATTCCAATAAAGTTGCTCGTATAGT
CAACAAATCTGTATTTGATTACATTGATCGAACATCATACAGGACATTGGCTTTTGACTACCTTGATTTTTCACCTCTCTACCCATTTGTCTCCGGAATCCGAGCATGGA
TCTCATTGCTTTTCTTGGACGATGGAAATGATGGCATAATTGATGTTTTTGGTATTGTAATGGATTTCTGTGATGCTGCAAACACAAAGGATGAGGTATTATGGCTTTTG
GACTTGCTTGATTGGAAATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MLVCKQWRDIARDDFFWKCLCAKKWPSTCKNPDPPTNTYYKLYQNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVAGQVLQSGMKPPPGTSNVINYHLEAPE
FKMTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSPLYPFVSGIRAWISLLFLDDGNDGIIDVFGIVMDFCDAANTKDEVLWLL
DLLDWK

CmoCh08G001120 (gene) of Cucurbita moschata (Rifu) v1 genome