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CmoCh08G001370 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G001370
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionFiber protein fb11
Genome locationCmo_Chr08:769246..773817
RNA-Seq ExpressionCmoCh08G001370
SyntenyCmoCh08G001370
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5538213.1 hypothetical protein RHGRI_018963 [Rhododendron griersonianum]7.4e-1349.54Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIG---QPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQ
        M VMEKLKMFVVQEPVVTASC+I G G    P    P P+ S PSP   +     +                        GLFLPAVVRPILDSFE SKQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIG---QPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQ

Query:  VPQPVLSDV
        V  P L+DV
Subjt:  VPQPVLSDV
RAL54219.1 hypothetical protein DM860_004690 [Cuscuta australis]3.3e-1350Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKT--YEGLFLPAVVRPILDSFEASKQV
        M VM+KLK+FVVQEPVV ASC++ G+G+   ++P    S P       +   D  + +      T   A  SK+     GLFLPAVVRPILDSFE+SKQV
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKT--YEGLFLPAVVRPILDSFEASKQV

Query:  PQPVLSDVVA
        PQP L+DVVA
Subjt:  PQPVLSDVVA
XP_008459762.1 PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo]1.6e-1249.09Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVV ASCIIGGI                                                   GLFLPA VRPILDS+EASKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVARL
        PVLSDVVA +
Subjt:  PVLSDVVARL
XP_022959928.1 uncharacterized protein LOC111460833 [Cucurbita moschata]5.1e-1451.82Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVVTASCIIGGI                                                   GLFLPAVVRPILDSFEASKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVARL
        PVLSDVVA +
Subjt:  PVLSDVVARL
XP_027115476.1 uncharacterized protein LOC113733330 [Coffea arabica]9.6e-1350Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVV ASC+IGGI                                                   GLFLPAVVRPILDSFE+SKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVA
        PVLSDVVA
Subjt:  PVLSDVVA
TrEMBL top hitse value%identityAlignment
A0A068UM29 Uncharacterized protein4.7e-1350Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVV ASC+IGGI                                                   GLFLPAVVRPILDSFE+SKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVA
        PVLSDVVA
Subjt:  PVLSDVVA
A0A328ECA5 Uncharacterized protein1.6e-1350Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKT--YEGLFLPAVVRPILDSFEASKQV
        M VM+KLK+FVVQEPVV ASC++ G+G+   ++P    S P       +   D  + +      T   A  SK+     GLFLPAVVRPILDSFE+SKQV
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKT--YEGLFLPAVVRPILDSFEASKQV

Query:  PQPVLSDVVA
        PQP L+DVVA
Subjt:  PQPVLSDVVA
A0A6J1H9H3 uncharacterized protein LOC1114608332.5e-1451.82Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVVTASCIIGGI                                                   GLFLPAVVRPILDSFEASKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVARL
        PVLSDVVA +
Subjt:  PVLSDVVARL
A0A6J1L1A7 uncharacterized protein LOC1114981902.5e-1451.82Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVVTASCIIGGI                                                   GLFLPAVVRPILDSFEASKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVARL
        PVLSDVVA +
Subjt:  PVLSDVVARL
A0A6P6WLJ8 uncharacterized protein LOC1137333304.7e-1350Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKLKMFVVQEPVV ASC+IGGI                                                   GLFLPAVVRPILDSFE+SKQVPQ
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVA
        PVLSDVVA
Subjt:  PVLSDVVA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46540.1 unknown protein1.0e-1242.59Show/hide
Query:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ
        MPVMEKL+MFV QEPVV ASC+IGG+                                                   GLFLPAVVRPILDS EASKQV  
Subjt:  MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQ

Query:  PVLSDVVA
        P L+DV+A
Subjt:  PVLSDVVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCAACCCGTAAGTTTGGAGCCACTACCTGC
ACAAAGTACACCATCGCCGCTAGTGACCAGTGGTGAAATGAAATACGATAACAAATTTGCAACCCCAATGACAAGAAATAACACTAAAGATAATGCTGCAGAATCAAAGA
AAACTTACGAAGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTTGCAAGACTT
CATGATGAGACGATTATGAACCGATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTACCAGATATTGTGCTTATTTTTATCCCTTTGATGTG
CCTTTGGAGTGCTCATTAA
mRNA sequenceShow/hide mRNA sequence
TTTTCTTGTCCGGGTCATTGAAGAAGAGCGGAGTTTCACGCATTAGCTCTGGACTTTGAAGGATCATACCACGAAGGTTGTTCAGTTCAGGAAGCGAATCAGACGGAAGT
TTCGAGAAGATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCTGTGGTGACTGCATCGTGTATCATCGGTGGAATTGGTCAACCCGTAAGTTTGGAGCC
ACTACCTGCACAAAGTACACCATCGCCGCTAGTGACCAGTGGTGAAATGAAATACGATAACAAATTTGCAACCCCAATGACAAGAAATAACACTAAAGATAATGCTGCAG
AATCAAAGAAAACTTACGAAGGTCTCTTCCTTCCAGCCGTTGTAAGGCCAATTCTGGATTCCTTTGAAGCATCTAAGCAAGTTCCTCAGCCTGTATTAAGTGATGTGGTT
GCAAGACTTCATGATGAGACGATTATGAACCGATACACGAAAGTGATGACTAATTCATGGCTGTGTTGGTCTTTCTTGAAGTTACCAGATATTGTGCTTATTTTTATCCC
TTTGATGTGCCTTTGGAGTGCTCATTAA
Protein sequenceShow/hide protein sequence
MPVMEKLKMFVVQEPVVTASCIIGGIGQPVSLEPLPAQSTPSPLVTSGEMKYDNKFATPMTRNNTKDNAAESKKTYEGLFLPAVVRPILDSFEASKQVPQPVLSDVVARL
HDETIMNRYTKVMTNSWLCWSFLKLPDIVLIFIPLMCLWSAH