; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh08G001960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G001960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L38
Genome locationCmo_Chr08:1144106..1147195
RNA-Seq ExpressionCmoCh08G001960
SyntenyCmoCh08G001960
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]6.0e-5470.56Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITE
        MPKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP          VR L+         L  ++  G+     
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITE

Query:  PNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
                    L      PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Subjt:  PNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]1.1e-5066.11Show/hide
Query:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP
        PKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPP      +V      +  +L+L + L              
Subjt:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP

Query:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                          PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]3.0e-5368.78Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPP-GLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSIT
        MPKQI+EIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA KLKQSLPP  LS     L +    +F    ++ ++ R  +  L + 
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPP-GLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSIT

Query:  -EPNSVLYVFVSYV------LSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
           +S  +V V+ V      + H  + PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  -EPNSVLYVFVSYV------LSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]1.0e-5367.72Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPP--------GLSVQDLVLFVRTLSIFLLNLSVFLRRRRF
        MPKQI+EIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA KLKQSLPP        GL +   +LF    ++ +   ++      F
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPP--------GLSVQDLVLFVRTLSIFLLNLSVFLRRRRF

Query:  LGTLSITEPNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        L        +S +  FV ++       PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  LGTLSITEPNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]2.5e-5268.89Show/hide
Query:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP
        PKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA KLKQSLPP          V  LS   + L +F               
Subjt:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP

Query:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                         QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG
Subjt:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein3.0e-5163.54Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITE
        MPKQI+EIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA KLKQSLPPGL+VQ                                 
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITE

Query:  PNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                          +PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPPG
Subjt:  PNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A103XQP8 Ribosomal protein L38e (Fragment)1.2e-5268.89Show/hide
Query:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP
        PKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA KLKQSLPP          V  LS   + L +F               
Subjt:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP

Query:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                         QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG
Subjt:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A498I9U8 Uncharacterized protein1.3e-3358.86Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITE
        +PKQI+EIKDFLLTARRKDARSVKIK++KD VKFKV CSKYLYTLCVFDS+KA+KLKQSLPP  +        +  S F   L+V             T+
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITE

Query:  PNSVLYVFVSYV-LSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
         N  L  ++S + +  +   PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Subjt:  PNSVLYVFVSYV-LSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS

A0A4S4DHN9 Uncharacterized protein6.3e-4161.58Show/hide
Query:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP
        PKQI+EIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKA+KLKQSLPPG           T   +  +   F  R       +  EP
Subjt:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEP

Query:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
         S ++   ++  S    QPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Subjt:  NSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL

A0A6A2WU09 60S ribosomal protein L381.4e-4556.42Show/hide
Query:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLR-------RRRFLG
        PKQI+EIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KA+KLKQSLPPG     L+   R  S F+LN     R        + FL 
Subjt:  PKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLR-------RRRFLG

Query:  TLSITEPNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTL
        T    +  SV    +      V  +PKQIHEIKDFLLTARR                               KDARSVKIK+S+DVVKFKVRCSKYLYTL
Subjt:  TLSITEPNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVVKFKVRCSKYLYTL

Query:  CVFDSEKADKLKQSLPPG
         V D EKADKLKQSLPPG
Subjt:  CVFDSEKADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L382.4e-2992.75Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

P46291 60S ribosomal protein L382.9e-2788.41Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Q32PB9 60S ribosomal protein L381.5e-2378.26Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKAEKLKQSLPPGL+V++L
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Q95V84 60S ribosomal protein L383.9e-2479.71Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Q9JJI8 60S ribosomal protein L385.2e-2479.71Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKAEKLKQSLPPGL+V+DL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family1.7e-3092.75Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family1.7e-3092.75Show/hide
Query:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL
        MPKQI+EIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPGLSVQDL
Subjt:  MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCG
ATGCTCCAAGTATCTTTATACTCTCTGTGTTTTCGACTCCGAGAAGGCAGAAAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTTGTACTGTTTGTGC
GTACTCTTTCCATTTTCTTGCTCAATCTATCTGTATTTCTCCGCCGCCGCCGGTTTCTTGGCACCTTGAGCATAACAGAACCGAATAGCGTTCTGTATGTTTTCGTATCT
TATGTTTTATCTCATGTCAATATGCAGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATCAAGAGGAGCAA
AGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTGTATACTCTCTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG
mRNA sequenceShow/hide mRNA sequence
TCTTTGCCCGCCCCCATGATTTAGAATTAGGGTTTGTGAAGGGGTTTCAGCATCGCTACACTCGAGAAGGCGCCCACTCTGTTCTTCACGGAAAATGCCGAAGCAAATTA
ACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCGATGCTCCAAGTATCTT
TATACTCTCTGTGTTTTCGACTCCGAGAAGGCAGAAAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTTGTACTGTTTGTGCGTACTCTTTCCATTTT
CTTGCTCAATCTATCTGTATTTCTCCGCCGCCGCCGGTTTCTTGGCACCTTGAGCATAACAGAACCGAATAGCGTTCTGTATGTTTTCGTATCTTATGTTTTATCTCATG
TCAATATGCAGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATCAAGAGGAGCAAAGATGTGGTGAAGTTC
AAAGTTCGATGCTCTAAGTATCTGTATACTCTCTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG
Protein sequenceShow/hide protein sequence
MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEPNSVLYVFVS
YVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG