CuGenDBv2

Gene ID	CmoCh08G002070
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RRM domain-containing protein
Genome location	Cmo_Chr08:1219376..1221596
RNA-Seq Expression	CmoCh08G002070
Synteny	CmoCh08G002070
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-107

96.68

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Query:  VSPTIKCSLSSHMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMS
        V P    SLSSHMGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+IAQFPFMMS
Subjt:  VSPTIKCSLSSHMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMS

Query:  GMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL
        GMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL
Subjt:  GMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL

Query:  ARRYNMRVADD
        ARRYNMRVADD
Subjt:  ARRYNMRVADD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-108

97.16

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Query:  VSPTIKCSLSSHMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMS
        VSP    SLSSHMGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+IAQFPFMMS
Subjt:  VSPTIKCSLSSHMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMS

Query:  GMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL
        GMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL
Subjt:  GMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL

Query:  ARRYNMRVADD
        ARRYNMRVADD
Subjt:  ARRYNMRVADD

XP_022959585.1 uncharacterized protein LOC111460615 [Cucurbita moschata]

2.5e-105

100

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

6.8e-103

96.98

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+I+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

1.6e-104

98.99

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+IAQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

2.2e-86

81.91

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGS  DEQ+  FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRP+KPGRKISF WL  DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM DGTARRLA+ YNMR++DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A1S3B3J3 uncharacterized protein LOC103485592

6.7e-88

83.42

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
         EMFDDRP+KPGRKISF WL  DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM DGTARRLA+ YNMRV+DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A6J1DB90 uncharacterized protein LOC111018537

2.0e-84

80.9

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSAT+EQ+  FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKD KEA SVIS+IA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE AFLLKQQL+EEEKLAKQQQ+ LK NYKK+EIVE VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A6J1H6P8 uncharacterized protein LOC111460615

1.2e-105

100

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

A0A6J1KVQ1 uncharacterized protein LOC111498019

3.3e-103

96.98

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS+I+QFPFMMSGMPRPVRAYPAE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD
        VEMFDDRPIKPGRKISFVWLGK+DPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALK NYKKYEI+EGVMTDGTARRLARRYNMRVADD
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.4e-45

46.67

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P       LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR
          MF D+P KPGR + F W+  +DPDF+ A+++K L ++H AE +F+LK  L E EKL+KQQ +    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

1.5e-47

47.18

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Query:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P       LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAE

Query:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR
          MF D+P KPGR + F W+  +DPDF+ A+++K L ++H AE +F+LK+QL E EKL+KQQ +    ++KK+E+++ ++ DG A++LA RY+++
Subjt:  VEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMR

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

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ATGGTTGTAACCTTGGAGCATGGGGCCATTTCTTCATGCCAAAAGTTTGCTTCTGATGAAGTTTCTCCAACTATTAAATGTTCTTTATCATCCCACATGGGATCAGCTAC
GGATGAACAATATGTTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTG
GGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCT
CTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGAT
TAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGT
TGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTA
GCAAGGCGTTATAATATGCGAGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGAT
GGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTGGATTCGTCTCTTGTTTGGGAAA
TGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTATAAGAGCTTGAGAACGGACAAAGGCATAGGTTGAACACCTCAAAGAAACAACTCTAAACTTTTAAGGACCC
TGTCCCATCGAAAACAAATATTGTCTTCTTTCGGCTTTCCTTTCTAGGTTTCCCTTTAAGATTTTTAAGACACGTCTACACTCTTATAAAGAATATTTCATTATCCTTCC
AACCATTGTGTGATCTCACAAAACATACTCTTGCAACATCACATCTCCAAAGAAAATGATCGAAGTCTCTTG

Protein sequence

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MVVTLEHGAISSCQKFASDEVSPTIKCSLSSHMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVIS
LIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRL
ARRYNMRVADD

CmoCh08G002070 (gene) of Cucurbita moschata (Rifu) v1 genome