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CmoCh08G002390 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh08G002390
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 1 isoform X1
Genome locationCmo_Chr08:1446040..1446804
RNA-Seq ExpressionCmoCh08G002390
SyntenyCmoCh08G002390
Gene Ontology termsGO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0017025 - TBP-class protein binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593022.1 Transcription initiation factor TFIID subunit 1, partial [Cucurbita argyrosperma subsp. sororia]2.4e-4491.51Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

KAG7025432.1 Transcription initiation factor TFIID subunit 1 [Cucurbita argyrosperma subsp. argyrosperma]2.4e-4491.51Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

XP_022959797.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita moschata]2.4e-4491.51Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

XP_023004897.1 transcription initiation factor TFIID subunit 1 isoform X1 [Cucurbita maxima]2.0e-4389.62Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGE+LEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHTPLPVLCMENGM ILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

XP_023513701.1 transcription initiation factor TFIID subunit 1 [Cucurbita pepo subsp. pepo]1.0e-4289.62Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGEYLEVVSEGEKS AEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHT LPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

TrEMBL top hitse value%identityAlignment
A0A5A7SLH8 Transcription initiation factor TFIID subunit 1 isoform X12.0e-2867.92Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DE+GE LE+VSEGE+ FA  DL S P NNEV T   E L E          TPEV KR+Q++K+HTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR S
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RY +RR
Subjt:  RYCSRR

A0A5D3CJJ0 Transcription initiation factor TFIID subunit 1 isoform X22.8e-3068.18Show/hide
Query:  MILPDEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKE
        M LPDE+GE LE+VSEGE+ FA  DL S P NNEV T   E L E          TPEV KR+Q++K+HTPLPVLCMENGMAILQFSEIFGVHDSLKKKE
Subjt:  MILPDEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKE

Query:  KRDSRYCSRR
        KR SRY +RR
Subjt:  KRDSRYCSRR

A0A6J1DM24 transcription initiation factor TFIID subunit 16.0e-3372.64Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DE+GE LEV  EGEKS A+DD+ S   NNEVITSS EEL E         ETPEV+K++ +EKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKR+S
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYC+RR
Subjt:  RYCSRR

A0A6J1H5J5 transcription initiation factor TFIID subunit 1 isoform X11.2e-4491.51Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

A0A6J1L0S9 transcription initiation factor TFIID subunit 1 isoform X19.8e-4489.62Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS
        DEQGE+LEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFE         ETPEVEKRMQEEKAHTPLPVLCMENGM ILQFSEIFGVHDSLKKKEKRDS
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDS

Query:  RYCSRR
        RYCSRR
Subjt:  RYCSRR

SwissProt top hitse value%identityAlignment
Q67W65 Transcription initiation factor TFIID subunit 18.6e-0546.03Show/hide
Query:  SSPEELFEIS--QGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKK
        S PEE FE    Q E V  E         E K  T LPVLC+E+G  IL+FSEIFG  + ++K
Subjt:  SSPEELFEIS--QGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKK

Q6PUA2 Transcription initiation factor TFIID subunit 1b1.9e-0432.74Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSV------PFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCME-NGMAILQFSEIFGVHDSLK
        DEQG   +     EKSF  ++   V      P  +E   S      ++  G+        + +   +EK  TPLP L +E +GM ILQFSEIF + +  K
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSV------PFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCME-NGMAILQFSEIFGVHDSLK

Query:  KKEKRDSRYCSRR
        K++KR+ R  + R
Subjt:  KKEKRDSRYCSRR

Q8LRK9 Transcription initiation factor TFIID subunit 13.2e-0732.14Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHE---TPEVEKRMQ---EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKK
        DE+ E  E  +  EKS   +    V    +      EE   + + + +  E     EV++ ++   ++K  TPLP L +E+GM ILQFSEIF +H+  +K
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHE---TPEVEKRMQ---EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKK

Query:  KEKRDSRYCSRR
        +++R++RY + R
Subjt:  KEKRDSRYCSRR

Arabidopsis top hitse value%identityAlignment
AT1G32750.1 HAC13 protein (HAC13)2.3e-0832.14Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHE---TPEVEKRMQ---EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKK
        DE+ E  E  +  EKS   +    V    +      EE   + + + +  E     EV++ ++   ++K  TPLP L +E+GM ILQFSEIF +H+  +K
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHE---TPEVEKRMQ---EEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKK

Query:  KEKRDSRYCSRR
        +++R++RY + R
Subjt:  KEKRDSRYCSRR

AT3G19040.1 histone acetyltransferase of the TAFII250 family 21.4e-0532.74Show/hide
Query:  DEQGEYLEVVSEGEKSFAEDDLPSV------PFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCME-NGMAILQFSEIFGVHDSLK
        DEQG   +     EKSF  ++   V      P  +E   S      ++  G+        + +   +EK  TPLP L +E +GM ILQFSEIF + +  K
Subjt:  DEQGEYLEVVSEGEKSFAEDDLPSV------PFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCME-NGMAILQFSEIFGVHDSLK

Query:  KKEKRDSRYCSRR
        K++KR+ R  + R
Subjt:  KKEKRDSRYCSRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTTCCAGATGAGCAAGGTGAATACCTTGAGGTGGTTTCTGAAGGGGAAAAATCTTTTGCAGAAGATGATCTACCGTCTGTCCCCTTCAATAATGAAGTTATAAC
CAGTAGTCCAGAAGAATTGTTTGAGATTTCTCAAGGTGAATTTGTTTGTCATGAGACACCTGAAGTAGAGAAGCGAATGCAAGAGGAGAAGGCTCATACTCCCTTACCTG
TATTGTGCATGGAGAATGGGATGGCAATCTTACAATTTTCTGAAATTTTTGGTGTTCATGATAGTTTGAAGAAAAAGGAGAAGAGAGATTCTAGATATTGTTCTCGTAGA
GGTGCATGTCCCACAAACATTATATGCGCTTCCTATTGTCTTTTTGATGTCATCTCAGAGCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTTCCAGATGAGCAAGGTGAATACCTTGAGGTGGTTTCTGAAGGGGAAAAATCTTTTGCAGAAGATGATCTACCGTCTGTCCCCTTCAATAATGAAGTTATAAC
CAGTAGTCCAGAAGAATTGTTTGAGATTTCTCAAGGTGAATTTGTTTGTCATGAGACACCTGAAGTAGAGAAGCGAATGCAAGAGGAGAAGGCTCATACTCCCTTACCTG
TATTGTGCATGGAGAATGGGATGGCAATCTTACAATTTTCTGAAATTTTTGGTGTTCATGATAGTTTGAAGAAAAAGGAGAAGAGAGATTCTAGATATTGTTCTCGTAGA
GGTGCATGTCCCACAAACATTATATGCGCTTCCTATTGTCTTTTTGATGTCATCTCAGAGCGTTAA
Protein sequenceShow/hide protein sequence
MILPDEQGEYLEVVSEGEKSFAEDDLPSVPFNNEVITSSPEELFEISQGEFVCHETPEVEKRMQEEKAHTPLPVLCMENGMAILQFSEIFGVHDSLKKKEKRDSRYCSRR
GACPTNIICASYCLFDVISER